UFO03591.5prime Sequence
1128 bp (1039 high quality bases) assembled on 2009-02-03
> UFO03591.5prime
CAGTCGACATGTGGATATCCATGAACCTGTGGGGAATAGCTCGATTGCAG
TGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAAAAGAGTACAAGCAAATC
GTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAATATGTCCA
TGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGCGTGGTGAC
AGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTGGGGTCCAT
TTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTGGCCCAATC
CCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGGAGGCTCGC
GAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGCGACGACGT
ACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGCTGAAGTGC
TGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGTTCGACGAT
CACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGTCTTGCCAT
TCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGCACAGTTCT
GCGGTCATGTAACCGCGGTGGCTATGCTCGACAAAGATCTGGTACCTGTG
ACTAATCGGTATGCGTATGCACTCATTGAGTCCAGTAAAAGCTTTTTGCA
TGGACGCTGCCTTTGCGAACTGGCCAAACAGATTGGATTCACCGACCATG
CCACTGATCGGTTCGCGCTGGAGGGTCAATTGGCTAGCTATCGCCACTTG
CAACCTGATGTTGTGCGAAGGGACATTCGTTTCGCCCGGCAGCTCCAGCT
GTCCTCAAAGGTGAAGGTCCCATTCCCGCACTCTTTGTCTGTGGTCATGC
GCGAGATCCAGCGGCTATTTTATCACCTTCTCACCCAGGGAACAGCAGAC
ATTATACTGGACTGCTGCGATGACTTTTGGGACGGCATTGATCTGCGACC
AATTGTCCGCACAGGATCGCAAGCGTGCACTGACTTTTATCAGCCCAGCG
CGCTGACGTCTTATTGTACGCGTTTGCTATACAGCATTCCTAAGGCACGC
ATCAATGGAGTCCTTACGGTCTTCTAAC
UFO03591.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k05819-RA | 4864 | CG3054-RA | 1111..2225 | 8..1121 | 5155 | 98 | Plus |
l(2)k05819-RD | 5201 | CG3054-RD | 1111..1761 | 8..658 | 3255 | 100 | Plus |
l(2)k05819-RC | 4819 | CG3054-RC | 1111..1761 | 8..658 | 3255 | 100 | Plus |
l(2)k05819-RD | 5201 | CG3054-RD | 1761..2180 | 703..1121 | 1680 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4395418..4395952 | 8..542 | 2675 | 100 | Plus |
2L | 23513712 | 2L | 4396968..4397237 | 800..1069 | 1010 | 94.9 | Plus |
2L | 23513712 | 2L | 4396009..4396172 | 540..703 | 820 | 100 | Plus |
2L | 23513712 | 2L | 4396809..4396906 | 703..800 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:03 has no hits.
UFO03591.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:14 Download gff for
UFO03591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RB | 114..1193 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:34 Download gff for
UFO03591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RA | 1106..2185 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:22 Download gff for
UFO03591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RA | 1106..2185 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:22 Download gff for
UFO03591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4395413..4395950 | 1..540 | 99 | -> | Plus |
2L | 4396010..4396172 | 541..703 | 100 | -> | Plus |
2L | 4396810..4396906 | 704..800 | 100 | -> | Plus |
2L | 4396969..4397250 | 801..1080 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:34 Download gff for
UFO03591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4395413..4395950 | 1..540 | 99 | -> | Plus |
arm_2L | 4396010..4396172 | 541..703 | 100 | -> | Plus |
arm_2L | 4396810..4396906 | 704..800 | 100 | -> | Plus |
arm_2L | 4396969..4397250 | 801..1080 | 95 | | Plus |