UFO03592.5prime Sequence
1123 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03592.5prime
CAGTCGACATGGAGAAGTACGAGTGCAAGCCAGAGCCGGTGGAGAAGAAG
GAGAAGCCGGTGGAAGAGCTAATGAACTGGGATGCCTACTACAAGAACCG
CGGATTGGTCAGCACCCGATTGGGCAGCTGCAAAGCGGACTACATGCACT
GCTCCACGTACCAGGAGAAGGGTAATGCCCAGGAGAAGGACAAGAAGGGT
AAGGGCGCGTGCTGTTGCTCCTCCTGTCCGGTTCGAAACCGGGAAGAGGT
ATACCAGCCCAGGTGCCCGGCTCCCGGCCAGAAGGGCAAGCCCAACAGGG
ACTACATGCGCTGCTTTGCCGCCAAACTGATCGTTCAGAAGCTCAACATG
CCCGGTAGGGACTTCGAATGCCAGGATAAGCTGCAGATTAAGGCAAACGT
GTGCCGCGGGTGCAAGATCTGCCTTGGTTCCAGCAGCATCAATGTCAACT
GTCTTCCACTGAATCCGGACAAGACATTCCAGATGGAAGCCGAGTGCCTG
CAGAGGCAGCTGGCCGAAGGCATAAACATATCCGTGGTCTATCTGCGCAA
GGAGATCGCACGAGGCTGCTATTTTCCACCCGCGGCGGTGGTCAGTCGCA
TGATCAACGATTTTGACGAGATTGTGCACGATGCGAATGTGGAGCTAACC
TGCAAGGGATGCACCGTCGGCATTATGAACATCCGCTTCGCCATGCAGAT
GCGCTGCCAGACCCTCAAAGAAGATGCGGTCGATGGACGATTGGCGGGCG
GCCAGGAGCGGGGGTGTTTTCCGAACATGAATGTGGATCTCCAGGACCTC
TCCTTCATGTCCACCTCTTCCATTGATCCGTGTGTGGGTTTCATGCCCAG
TGATACGGAGGTAGCGCAGGATTCCCCTCCTTGCAGTGAGGATAGGGCGC
AGGATTCTTTTCATGTCAGGATTCCCCACTCGCCTGATCGACATGGCGGG
TCCCTATCCCGTGTACTCCTGGTCCCAACGTGGACGACGGATTGTGTGAC
TTCGAGCCCCCGGCGGGTCCTGCACTCAGTTCTCCTCTGCCAAAGACGTC
TAGTGGAGGGAATGCAAACCGCTGCTGCGAAACATTCCTCGCAGACTGCA
CGAATGCCATTCGCCACCCGAAT
UFO03592.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppi1-RA | 3310 | CG31025-RA | 182..1283 | 9..1099 | 5075 | 98.1 | Plus |
| Ppi1-RB | 3376 | CG31025-RB | 182..894 | 9..721 | 3565 | 100 | Plus |
| Ppi1-RB | 3376 | CG31025-RB | 961..1349 | 722..1099 | 1510 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30128389..30128938 | 558..9 | 2750 | 100 | Minus |
| 3R | 32079331 | 3R | 30127908..30128099 | 913..722 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 30128166..30128329 | 721..558 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 30127731..30127851 | 1037..918 | 365 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:18 has no hits.
UFO03592.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:13 Download gff for
UFO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31025-RA | 178..1232 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:50 Download gff for
UFO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppi1-RA | 178..1232 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:07 Download gff for
UFO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppi1-RA | 178..1232 | 1..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:07 Download gff for
UFO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30127711..30127849 | 920..1053 | 93 | <- | Minus |
| 3R | 30127901..30128099 | 722..919 | 99 | <- | Minus |
| 3R | 30128166..30128328 | 559..721 | 100 | <- | Minus |
| 3R | 30128389..30128942 | 1..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:50 Download gff for
UFO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25953433..25953571 | 920..1053 | 93 | <- | Minus |
| arm_3R | 25953623..25953821 | 722..919 | 99 | <- | Minus |
| arm_3R | 25953888..25954050 | 559..721 | 100 | <- | Minus |
| arm_3R | 25954111..25954664 | 1..558 | 99 | | Minus |
