UFO03594.5prime Sequence
1105 bp (1000 high quality bases) assembled on 2009-02-03
> UFO03594.5prime
CAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACAAAATGAAC
GGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACCATCCAAAC
GGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGACATGAAGC
TGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCATGATGGAG
GCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTTGTCGATAA
GTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCCCACCGACT
GGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAGATCTGAAG
CAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGACGCAAAAT
GAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCATTCCCGTGC
CAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCTACTACTGG
GACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATGTTTGACAC
CGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCGGTTCGGTT
TTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCCAGCCGCCA
CTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAACGATGACAA
GTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGAGTTCTTTG
TGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTGTGTACCGC
GATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGATGTGGAGAC
CGGCGAGGAGTTCCCCACGGATGAGCCAAGGAACTGCATTACAGTGAACT
CAAGGCAGCGCCGAATCGGGCATGGACTTTAGCTCGCGCTGGGTCATCTC
ACGACTGGAACCAATGATGGCAACCGGAGCGCTCTTGAGCACCACCTCCA
TTTGTGCCCGTCGACCTGATGCCTATCTCTACTGGAACGCCAAGTGATGC
CGGTCCATTCCAAAGCGGCCAACCATAAGTCACCGAACACGAAACAAGGG
CGAAA
UFO03594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Treh-RG | 2991 | CG9364-RG | 484..1589 | 9..1103 | 5095 | 98.1 | Plus |
| Treh-RA | 2758 | CG9364-RA | 251..1356 | 9..1103 | 5095 | 98.1 | Plus |
| Treh-RD | 2992 | CG9364-RD | 485..1590 | 9..1103 | 5095 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21085448..21086246 | 249..1045 | 3690 | 99.1 | Plus |
| 2R | 25286936 | 2R | 21085197..21085387 | 58..248 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 21077090..21077139 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:44 has no hits.
UFO03594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:19 Download gff for
UFO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RA | 490..1566 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:07 Download gff for
UFO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RD | 479..1555 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:24 Download gff for
UFO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RD | 479..1555 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:24 Download gff for
UFO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21077084..21077139 | 1..58 | 93 | -> | Plus |
| 2R | 21085198..21085387 | 59..248 | 100 | -> | Plus |
| 2R | 21085448..21086278 | 249..1073 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:07 Download gff for
UFO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16964589..16964644 | 1..58 | 93 | -> | Plus |
| arm_2R | 16972703..16972892 | 59..248 | 100 | -> | Plus |
| arm_2R | 16972953..16973783 | 249..1073 | 98 | | Plus |
