UFO03596.5prime Sequence
978 bp (807 high quality bases) assembled on 2009-02-03
> UFO03596.5prime
CAGTCGACATGAATAGCCTGGCGCGGGTTTTCAGCAACTTCCGCGACTTC
TACAACGACATCAATGCCGCCACCCTCACGGGAGCCATCGATGTGATCGT
GGTGGAGCAGCGCGATGGCGAGTTCCAGTGCTCGCCCTTCCACGTCCGGT
TCGGCAAACTGGGAGTGCTCAGGAGTCGGGAGAAGGTGGTGGACATTGAG
ATCAATGGCGTACCGGTCGACATACAGATGAAGCTGGGCGATTCTGGCGA
GGCCTTCTTTGTGGAGGAGTGCCTGGAGGATGAGGACGAGGAGCTGCCAG
CCAACCTGGCCACCTCGCCCATACCCAACAGCTTCTTGGCGTCTCGGGAC
AAGGCCAACGACACCATGGAGGACATCAGTGGAGTGGTGACAGATAAAAA
CGCTAGCGAGGAGCTGCTTCTGCCACTGCCATTGCCGCGGCGCAACTCCA
TTGACTTCTCCAAGGAGGAGCCCAAGGAAGCCGTTGTTGAGGGCAGCAAG
TTCGAGAATCAAGTCTCGGACTACACGCAGCGCAGGCACACCGACAACAC
ACTGGGAGCGTCGCAACCTAAGCGAAAAGCTCAAGGAGTTCACCACGCAG
AAGATCCGGCAGGAGTGGGCCGAGCACGAAGAGCTGTTTCAGAGCGAGAA
GAAGCCGGCGGACTCGGACTCGCTGGACAACAAAGCAAAGCTTCAAACGA
AGCTGAGACGGAGAAGGCATTTCCGGCGGTCATTGAAGACACGGAAAAAG
AAAAGGATCAGATCAACCAGACGTTAACCTCACCACGGTCACACCAGCGA
AGCCACCAAGGAGGTGTCCAAGAGCAAAACCAAGAAGGCGGCGCAGAGTC
GCCATGAGAGATGCTCAGCGCAGACTCTCAGCAGCTCATGGCAGCGCGGC
GGCGTGATTGGCTCCGCCGAGACGCATCACTGGGAGTGAGCACATCGATG
AAGAACGCCCCATATCATGCACAACACA
UFO03596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpin-RE | 3867 | CG8709-RE | 483..1446 | 9..953 | 4170 | 96.9 | Plus |
| Lpin-RL | 3959 | CG8709-RL | 480..1443 | 9..953 | 4170 | 96.9 | Plus |
| Lpin-RB | 4088 | CG8709-RB | 480..1443 | 9..953 | 4170 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8141517..8141823 | 837..533 | 1310 | 98.1 | Minus |
| 2R | 25286936 | 2R | 8142099..8142308 | 397..188 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 8142641..8142822 | 190..9 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8141886..8142028 | 540..398 | 700 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:38 has no hits.
UFO03596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:19 Download gff for
UFO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8709-RB | 476..1306 | 9..837 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:41 Download gff for
UFO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RB | 480..1310 | 9..837 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:35 Download gff for
UFO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RB | 480..1310 | 9..837 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:35 Download gff for
UFO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8142099..8142307 | 189..397 | 100 | <- | Minus |
| 2R | 8142643..8142822 | 9..188 | 100 | | Minus |
| 2R | 8141517..8141820 | 536..837 | 98 | <- | Minus |
| 2R | 8141891..8142028 | 398..535 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:41 Download gff for
UFO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4030148..4030327 | 9..188 | 100 | | Minus |
| arm_2R | 4029604..4029812 | 189..397 | 100 | <- | Minus |
| arm_2R | 4029022..4029325 | 536..837 | 98 | <- | Minus |
| arm_2R | 4029396..4029533 | 398..535 | 100 | <- | Minus |
