UFO03601.5prime Sequence
989 bp (861 high quality bases) assembled on 2009-02-04
> UFO03601.5prime
GCCTCCAATGAGGCGCAAGCCTTCCTTTCGAAGGGCGCCCAGGTGATCAT
TCGCATGCGGGGATTACCATACGACGCCACCGCCAAGCAAGTGCTGGACT
TCTTCACCACTGGGGATACTCCGCCCTGCCATGTTCTTGACGGGAATGAG
GGCGTGCTGTTCGTTAAGAAGCCGGATGGACGGGCCACGGGTGATGCCTT
CGTGCTATTCGCAAACGAGACGGATGCGCCCAAGGCGCTGGGCCGGCACC
GTGAATCCATTGGGCAGCGGTACATTGAGCTATTCCGTTCCACGACCGCC
GAGGTGCAGCAGGTGCTCAACCGGTCGATGGACCCCAAGAACTATGAGTC
GGGCGGTGGGCACAGCCAGCCGCCGTTGATTGCCCAACTGCCCACGATGC
AGCTGCCGCTGCTGCCGCAGGTGGGTGCCCACAGCCTCAGCCACAGCCTC
GGAGCCAGCCCCGCTAACCTGTGCCCCCCCGTGCCACCTCCCGCTCTCCC
TCTCCCCACACAGCACCTCATCACCTCGGGCACCACCAAGAACTGCATCC
GACTGCGCGGACTGCCCTACGAGGCGATGGTCGAGCACATTCTGCATTTC
CTCGATGACTTTGCAAAGCACATCATTTATCAAGGTGTCCATATGGTTAT
CAATGCACAGGGCCAGCCAAGCGGTGAGGCCTTTATCCAGATGGACTTGG
AGGAGTCAGCGCGTCTGTGTGCTCAGCGCAGCACAACCATTATATGATGT
TCGGCAAGAAGTATCGGTACATCGAGGTGTTCAGTGTTCCGGGGACGACA
TGAACATGGTCCTCAACGGAGTCTGGGCCTCCACGGTGGCACAACCACCG
CCGCCTCACCTTGACCCCGCTCACAGCAGCAATCACTGCTGGCGCCCTAC
GGTATGTTCAGTTCGGCGGTCAGTCGCGACGAACGTAGCGCGTAACGCTC
ATCCCCGCTGGCGGACTCATACACACTCATCTGAACTTC
UFO03601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 5256 | CG8205-RD | 1442..2431 | 1..976 | 4460 | 97.7 | Plus |
| fus-RF | 5243 | CG8205-RF | 1429..2418 | 1..976 | 4460 | 97.7 | Plus |
| fus-RB | 4375 | CG8205-RB | 561..1550 | 1..976 | 4460 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15663231..15663799 | 661..93 | 2845 | 100 | Minus |
| 2R | 25286936 | 2R | 15662935..15663172 | 893..659 | 920 | 95.4 | Minus |
| 2R | 25286936 | 2R | 15663919..15664011 | 93..1 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:59 has no hits.
UFO03601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:12 Download gff for
UFO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1428..2421 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:40 Download gff for
UFO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 561..1554 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:43 Download gff for
UFO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 561..1554 | 1..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:43 Download gff for
UFO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15662837..15663170 | 661..981 | 92 | <- | Minus |
| 2R | 15663232..15663798 | 94..660 | 100 | <- | Minus |
| 2R | 15663919..15664011 | 1..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:40 Download gff for
UFO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11550342..11550675 | 661..981 | 92 | <- | Minus |
| arm_2R | 11550737..11551303 | 94..660 | 100 | <- | Minus |
| arm_2R | 11551424..11551516 | 1..93 | 100 | | Minus |
