UFO03602.5prime Sequence
1155 bp (1024 high quality bases) assembled on 2009-02-04
> UFO03602.5prime
CAGTCGACATGGACACCGGAAGTGTGGTTAGTGAACCGATTTCCGCGCAT
CATCGCGCCTTCGCCAAACAGAAGTCCGCCTCCATGACCATTCTCAATCC
GAAGGGTTGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGACTGCAGAGA
CGAACCAGGAGACTGCCAGTACCACGACCACCTCTACCCATTGTTCCACA
ACTGGAAGAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTCTCCTCGCG
ATCGACGCGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCAGGATCGGG
AGGCTGTCATCCAGAATCTGCGTATACAGCTTTGTCTGGGCAAACTGCCA
CGTCCCACGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCGGCTGAGCA
AAAACTAAACAGACTGAAGACGGAGGCGGAGAATAAGCGAATTAAGATCA
AGAACCTGAAGAGTGCCCTGGAGAAGCTGGACATCACAGACAACATAGAC
ATCCGCATCCGTCAAGCCGAATTGGAATACGCACTCGGCAGAGAAGAACT
CCAGATGCTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGCACGTCTGG
AAAAGTCCAAGCCCGAGGCGCAGACCCTCTACAACATCATCAGCTCTGGA
GTCTCCCTGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGATGGGCAGT
TCAACAGAGGACAGACCAGCCGGGTTTCTACGTAGAATGGGCTTTAGAGG
GTGATGGCTTGTACAAGGGCGATCGCATTTTGGAGATCAACGGACGACTG
GTAACCGGAAAATCCAAGGAAGAGCTGCAGAAGCAAGTAGAAACTCTGGC
AAGTGTCAGATGGTTGTACTCCGCAAGAAGTCCGTACCTATACCACAAAA
GCAACTAGACCAGGAGAAGAGACACATGACGCTGCAGCATCGCATATCGT
ACCTGGAAGAGCAGTGCGAGACTGCAGACAGTCAGGAGCATCATCATCGC
AACAGCAGTAGCAGCAGCAGCAGCACAGCAATCCCAGCAATCCAAGGCAA
AATCACAGCGACTTCCTCATCAATCTCAGCAGGTGACCGCATCAGCCATC
ATCACCTCCATCAACCCGCCGAACCGTTGTATATCTTCGACGGCACTAAT
TAACC
UFO03602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-RA | 2795 | CG30023-RA | 573..1705 | 9..1120 | 5065 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11386054..11386596 | 1025..491 | 2310 | 97.6 | Minus |
| 2R | 25286936 | 2R | 11386663..11387067 | 490..86 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 11391071..11391148 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:52 has no hits.
UFO03602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:12 Download gff for
UFO03602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 565..1716 | 4..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:18 Download gff for
UFO03602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 567..1718 | 4..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:55 Download gff for
UFO03602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 567..1718 | 4..1129 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:55 Download gff for
UFO03602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11385933..11386596 | 491..1129 | 95 | <- | Minus |
| 2R | 11386663..11387066 | 87..490 | 100 | <- | Minus |
| 2R | 11391071..11391154 | 4..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:18 Download gff for
UFO03602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7273438..7274101 | 491..1129 | 95 | <- | Minus |
| arm_2R | 7274168..7274571 | 87..490 | 100 | <- | Minus |
| arm_2R | 7278576..7278659 | 4..86 | 96 | | Minus |
