UFO03604.5prime Sequence
1139 bp (1015 high quality bases) assembled on 2009-02-04
> UFO03604.5prime
CAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCATCGCGATG
CGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTGAACTCCGG
GCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTGCCAGCTGC
TGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACAACGTGTGC
CGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGCACCCAGTG
CGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTATGATGGCCG
CCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCCACTCGGCA
TTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGGGAGCTGGT
GCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCATTCGCGAGG
GCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGCCGGATTTG
CCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACGCCGCCTAC
GTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCTCAACATCA
GCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTCACTTCTCG
CCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTCTCTCACGC
CGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTTCATGGACC
AAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGGTGTCCAAA
TACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATGCCCACTTC
TGCGACCACGAAGTTCGATCCACAGGAACTGCAAATCGGCCAGGTGGTGC
AAATGGCGGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTGAGAGACCG
TCGAGACGTCCACACAGTTGACTGGTGCTCTCCCCACCGTTGAGAGACCG
TTGAACATCCACGCCAGCAGAAGTGGCTTACCTCCGCTGAGGACCCACGA
AATCTTCTGAATCAATTGGCTTATTCTGCAAGTTGAGGAATCTGAGTGAG
CCCCTGTTGAAGAACGTGAAGAGGCCGAGAACCTCAATC
UFO03604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 3843 | CG3241-RA | 473..1610 | 8..1139 | 5175 | 97.9 | Plus |
| msl-2-RB | 3710 | CG3241-RB | 340..1477 | 8..1139 | 5175 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3464552..3465640 | 1095..8 | 4865 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:38 has no hits.
UFO03604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:11 Download gff for
UFO03604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RA | 465..1609 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:02 Download gff for
UFO03604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 333..1477 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:56 Download gff for
UFO03604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 333..1477 | 1..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:56 Download gff for
UFO03604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3464503..3465643 | 1..1139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:02 Download gff for
UFO03604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3464503..3465643 | 1..1139 | 97 | | Minus |
