UFO03605.5prime Sequence
1118 bp (1021 high quality bases) assembled on 2009-02-04
> UFO03605.5prime
CAGTCGACATGACGGCCAATTTGTTAAACCTGAACGTGGACACGCTGTTT
GAGCAGCACAGCGTGTCCGAGATAGACGAGGTGCACAAAAAGATCCAGTC
GGTGGTGGAGAACAAGCGCGAGGAGTTGCGCACTCATGTCGGGGAGCGGT
ACCGAGATCTTTTGCAGGCGGCTGACACCATTGCTGCGATGCAAACGTCG
GCCGGGACACTTATGGAGCAAGTGCGACACGTGCAGGCCAATTGCCGCAG
TCTAAACGAGCAGCAGCTCCTGGGCTTCCAGTCAACTGCCAATGCAAGTG
CTAAAGATGCCGCACTGAAGGAGAGGAACGCCGGAAAAAAGCTGCAGACC
TACTACGGCACCATGGCTCAGATTAAGTTGCTTACTGCCCTGCCGGAACT
AATCTGGACGCACTTGGACAACGATCGCTTCTATGCCGCTACTGAGTTGT
TCATCTTCAGTCGCCACATCAGCACGGGCTTGCAACTGGACGGCCAGAGT
GCCCTGATGCAGAAACTACCGGTAGCGCGCAAGCAATGGGAAATCCTGCG
TCCCTTTCACGTGACCATCAAACAAGCCATACTGACCGCACTGGAGAGGG
AGGAACTCCTACAAGAAATGACTGTGGACTGCCTGCAGAGCCTTCTCTTG
CTAGACAAAAGCGATTTGAGTACTGTGCTGAAATCCTTCTTGAACCTGCG
CTCCTCAGCCTTTCTGAACTGCCTGCAAAGCGGTCCATCGGAGCCACGTC
GCGTCAAGGATCGCATTTTGGCTAGCTTAAACGTGCTCAACAGCACCGTG
GAGCTTCTGGACAAGTGTCTTTTGGGTTATAGCCTTCTTTTTAGCCGCTT
GGAGGAGTGTGCCTCTTCTACGTGTCCACCCAGCATCAACCGAATGGAGA
GTAGCGAGCGCCAGCTGGTTCATCTTTTACCCGAAATCATCGCTGGTTTA
GCCACATTTGATGTACCTCAGCTAACACTGAGCAGTTGGGTCTTCACTTC
AACATGGCCTAGATAAAATGAACGCTGCAGCGCTCACTTGCAGCAGTCTT
TGCACTTAGTCACAACATGCAGACATCAGTATTAAGTCCCCGCAGAACTA
TGGTCGACGATTTCGTGC
UFO03605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 4785 | CG4848-RC | 83..1209 | 9..1116 | 5090 | 97.8 | Plus |
| CG4848-RB | 2973 | CG4848-RB | 83..1209 | 9..1116 | 5090 | 97.8 | Plus |
| CG4848-RA | 2919 | CG4848-RA | 83..1209 | 9..1116 | 5090 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12218730..12219415 | 827..142 | 3430 | 100 | Minus |
| 3R | 32079331 | 3R | 12218459..12218664 | 1025..825 | 770 | 96.1 | Minus |
| 3R | 32079331 | 3R | 12219470..12219604 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:11 has no hits.
UFO03605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:10 Download gff for
UFO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 80..1181 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:36 Download gff for
UFO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 76..1177 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:25 Download gff for
UFO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 76..1177 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:25 Download gff for
UFO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12218386..12218663 | 826..1089 | 93 | <- | Minus |
| 3R | 12218732..12219414 | 143..825 | 100 | <- | Minus |
| 3R | 12219471..12219611 | 1..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:36 Download gff for
UFO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8044108..8044385 | 826..1089 | 93 | <- | Minus |
| arm_3R | 8044454..8045136 | 143..825 | 100 | <- | Minus |
| arm_3R | 8045193..8045333 | 1..142 | 97 | | Minus |
