UFO03606.5prime Sequence
737 bp (464 high quality bases) assembled on 2009-02-04
> UFO03606.5prime
CAGTCGACATGGGGAAAATGGTCAGCGAGGAAATGGCCACGGATCCGGTG
GTCTCGGAAAAGGTGGAGCTATCGCGATTCGGAGAGTTCTGCCAGCGGCG
CGGCATCAATCCCAACTTGATAATGCTGAAGATAACCCTTTTCGTGATGT
ATGGCGCGACCTCATCCCTGCTGCCTTACCTAACGATTCACATGCAGTCG
ATTGGACTCACGGTGGAGGAGATTGCCATCATCTACCTGGCCCTGCCCTT
CACCACCTTCCTTAGCCCGCCCATAACAGGCTTCCTCGTTGACAAATTTG
GCAAATACAAACCGGTCGTTGTGATGAGTCTGCTCCTGAATGCGATTTTC
CACCACTCGCTGCTCTTTATTCCGCAGCAGGAGATTTCCGGGGCGTGTTG
CCATCGGCGTTCGTATTGAGACCATCAAGAACAGGCGGCGACATCGAGGT
CTGGGTGGGTCCCCCGTGTCCGAGTCGTGAGTGTCCCGGAGGAACCCGGG
AGCTGGAAATGGGCCGTGCATTCAGTGGGGCCAACTATTTGGTTGGATGG
CAGGAACAAGTTAATCCCCAGCTTTACCCCAAATACCCCCGGCGTAATGA
TGGGGGCCCCGGCAGCCCACCACGTCCACCACGCAGAAAATCCCCAGCTA
ACACGCCACCCACCGGCAAGGACGGACCCCCATGGGAACCCTCCCTCGGG
AATCGAAGCTCCATCGCGCCGGGCCAAACCACATCGA
UFO03606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31663-RC | 3846 | CG31663-RC | 727..1420 | 9..737 | 2485 | 92.3 | Plus |
| CG31663-RB | 3570 | CG31663-RB | 559..1252 | 9..737 | 2485 | 92.3 | Plus |
| CG31663-RA | 3678 | CG31663-RA | 559..1252 | 9..737 | 2485 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1879967..1880114 | 156..9 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 1875035..1875178 | 422..277 | 635 | 97.3 | Minus |
| 2L | 23513712 | 2L | 1876468..1876592 | 280..156 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:35 has no hits.
UFO03606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:09 Download gff for
UFO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 531..1000 | 9..486 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:39 Download gff for
UFO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 559..1028 | 9..486 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:34 Download gff for
UFO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 559..1028 | 9..486 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:34 Download gff for
UFO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1875012..1875175 | 280..448 | 95 | <- | Minus |
| 2L | 1876469..1876591 | 157..279 | 100 | <- | Minus |
| 2L | 1879967..1880114 | 9..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:39 Download gff for
UFO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1875012..1875175 | 280..448 | 95 | <- | Minus |
| arm_2L | 1876469..1876591 | 157..279 | 100 | <- | Minus |
| arm_2L | 1879967..1880114 | 9..156 | 100 | | Minus |
