UFO03607.5prime Sequence
1141 bp (1026 high quality bases) assembled on 2009-02-04
> UFO03607.5prime
CAGTCGACATGCCTTCCATTTTCCGCTTTCGTCTGCCTTTTCGCCGCAGC
GAGTTACCCGAAACCGGTCTCCTGAATACCTATGACGAGGACTTCACCTC
GTCCGCTGGGTACGATGCAGATGATGGGGAGAGGCGTATCATAAACCTAA
ATGGGCCACAGCCCACTAAGTACGGTAATAATCGCATAACGACGGCAAAA
TATAGTTTCATCAGCTTTTTGCCCGCGTTCCTGTTCGAGCAATTCCGGCG
TTACTCCAACTGCTTTTTCCTGCTAATTGCCATACTGCAACAAATCCCGG
AGGTGTCGCCGACGGGTCGTTACACCACGCTAGTGCCACTGATGTTCATC
CTTTCGGTGAGCGCCATTAAGGAGATAATCGAGGACATTAAACGACATCG
GGCGGATAATGAGATCAATCACCGATCGATAGAGCGCCTGGATAGTGGCT
CGTGGTGCACAGTTCGCTGGTCGGAGTTGACGGTGGGCGATATCATCAAA
GTGGGAATCAATACCTTCTTCCCCGCCGATCTGATTCTGCTGTCGTCCAG
TGAACCGCAGGCCATGTGCTTCATAGAGACGGCCAATTTGGATGGTGAGA
CCAACCTGAAGATTCGACAGGCCCTCCCAGCCACCGCTGAACTGCTGGAG
ACGAAGGATCTGCAACGATTGGAGGGCAGGATCGAGTGCGAGCTGCCCAA
CCGGCATTTATACGAGTTTAACGGAGTGCTCAGGGAAACTGGAAAGCCAC
CCGCTGCTTTGGGCAATGATCAGTGCTCCAACGTGGCGCCATTCTTCGGA
ACACGGCATGGGTGTTCGGGATCGTGGTCTACTCCGGGCAAGAGACGAAG
CTGATGAAGAACTCTACCTCGGCGCCATTGAAGCGCTCAACCGTAGACAA
GCTGACCAACACCCAGATCCTCATGCTCTTCATGATCCTCATCTCATTGT
GCATCATCAGCGGCTTGTGCAATCTGTTCTGGACAAGGGAACATTCGGAA
ACGGACTGGTACCTGGGGCCTAACCGACTCAGACAGAGCCTGGCTACAAC
CTGCTGACCTTCTCAACCTGTACAACACTGATCCCCATCTCGCTTACAGG
TGACCTGAACTTGTGCGTTTCCTGCAGGCCATTTCTAACTA
UFO03607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RM | 4261 | CG42321-RM | 269..1403 | 9..1134 | 5335 | 98.6 | Plus |
| CG42321-RL | 4552 | CG42321-RL | 373..1507 | 9..1134 | 5335 | 98.6 | Plus |
| CG42321-RK | 4658 | CG42321-RK | 373..1507 | 9..1134 | 5335 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13421313..13421707 | 1134..749 | 1400 | 95.5 | Minus |
| 2R | 25286936 | 2R | 13421839..13422039 | 748..548 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 389..204 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 550..390 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422725 | 205..82 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 13438607..13438679 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:36 has no hits.
UFO03607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:08 Download gff for
UFO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 358..1505 | 1..1140 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:00 Download gff for
UFO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 364..1511 | 1..1140 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:54 Download gff for
UFO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 364..1511 | 1..1140 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:54 Download gff for
UFO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13421304..13421707 | 749..1140 | 95 | <- | Minus |
| 2R | 13421839..13422036 | 551..748 | 100 | <- | Minus |
| 2R | 13422099..13422259 | 390..550 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 206..389 | 100 | <- | Minus |
| 2R | 13422602..13422725 | 82..205 | 100 | <- | Minus |
| 2R | 13438607..13438688 | 1..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:00 Download gff for
UFO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9308809..9309212 | 749..1140 | 95 | <- | Minus |
| arm_2R | 9309344..9309541 | 551..748 | 100 | <- | Minus |
| arm_2R | 9309604..9309764 | 390..550 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 206..389 | 100 | <- | Minus |
| arm_2R | 9310107..9310230 | 82..205 | 100 | <- | Minus |
| arm_2R | 9326112..9326193 | 1..81 | 95 | | Minus |
