UFO03611.5prime Sequence
1081 bp (991 high quality bases) assembled on 2009-02-04
> UFO03611.5prime
CAGTCGACATGAATGAGATTAGGGGCGAGGATAACCTCGAACGGCTGCGC
AACTATATCCTGCGACCGGAGCTGTCCCTCCACAATCCCCTGCCGGATGT
TTTGCCCCGCAAATTCGATCCGATGCGCCTGTTGCATGCGCCCCGTTGCC
CGGGAAGCACTAAGTTGGCTCCTCGCCGCGACCAGAGTGGTCACATACTT
GAGTTCGTGGAATTGGACTTGGAGGCCGTGGGCGCCAATGCCAACAACTC
GATGTCCATGCAGCGGGAGCCGGGCTTGCTGGAAGACGCGACGCGTGGCT
CCCACTCCAATTTTCCCTTTTGGCCAGGCGGTTTCGATGAGCAGCGCCAG
CAGATCGCAGCTCTGGATGTCAGCAACTTTCAGTTCGGGGACAAGCTGCT
AACGGTGCCACCGGGCTTCAGCTCTGGCTACGACTTCTTCCAATCGCAAT
CTGTAACACTGCCGCCTGTGGTCGCCGATCCCAGTAACGTTGATCTATTG
GAAAACCTAGAACAGGATCTGGACGTCCAGGAGTGGATGAAGCTTACGCG
TAGTGAGGAAACAAGCTCCACTGGAACGCCTAAAAGTCCAAAACAGTCGA
ACGTGCAATTACCTTCAGAGGAGTTCAGAGACGTGGACGATCACATTATG
AAGGCTGACCTAAAGCCTGTGCTAAACATTTCCACCACAACCAAGAACTT
CAAGAGCGATTGGGCCGAAATGGTGGACATAAGCCAACCCATCAATAACT
TTAAAGAGCAGATACCATGCCCCGCCATGGATTTCCCCTTCGAACTGGAT
GTCTTTCAAAAGCAGGCCATTCTCAAGCTGGAACAACGCCAGTACGTTTT
CGTTGCAGCGCATACATCTGCTGGCAAGACAGTTGTAGCTGAATATGCCA
TCGCTCTGTCCAAGCGTGATCTCACCCGCACATCTACACATCGCGATCAA
GGCGTTGTTCAATCAGAAGTACCGCGACTTCGAAAACCTTCAAGGATTGT
GGCCTTATTACAGGTGACCTGCAAATAAGCCACCGCCCTCTTGTCTGATC
TTGACCACGAGATTCTCCGTCATCCTGTATT
UFO03611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tst-RB | 3821 | CG10210-RB | 98..1178 | 9..1081 | 5055 | 98.5 | Plus |
| tst-RA | 4332 | CG10210-RA | 98..1178 | 9..1081 | 5055 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23771696..23772762 | 1069..9 | 4905 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:04 has no hits.
UFO03611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:39 Download gff for
UFO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tst-RA | 46..1126 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:21 Download gff for
UFO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tst-RA | 98..1178 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:36 Download gff for
UFO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tst-RA | 98..1178 | 9..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:36 Download gff for
UFO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23771682..23772762 | 9..1081 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:21 Download gff for
UFO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19597404..19598484 | 9..1081 | 98 | | Minus |
