UFO03613.5prime Sequence
1129 bp (1026 high quality bases) assembled on 2009-02-04
> UFO03613.5prime
CAGTCGACATGGTTCAGGAAGAGGAGGAGCCCTTTAGAGGGACAAACACT
GCGGAGGCACCTGCTTTGGAGCCCCAATTCGAGGAGACTCAGCACCAGAT
AGAGGATGACGTGGAAATGCTGCCAGCCGAAGCTGCTGGGGTTGATGAAA
AGAGCTCTTCCTTCCCGTTTGGCACGGTGGCGGAGCTGCATTCAGAGACT
AGTGATGATATTAAAGAGACACGCGGTCAGGCTGGCGTGGACACCCTACT
GGCTTCTTTAGCCGGCGATAATGCCAACAGCCTGCCCTCCGTGGGTGGAA
ATGACGAGAGTGACAATGTCAAGAAGGCGGACTTTGAGTACAATGTAGAC
TCCCTGCAGCCGCAGATGGAGAAAATGAATTCCTCTGAGGACTCCAGCTC
ACAACATGCCATTGCCGAGGATCTGGCCGATGCGGACACCAGCAATGCAA
CCATTGTCAACACAGAGATAGTCTCCGAGGATGAGCTACCTCTGCCCAGC
AAGCCTGAAATAAATGATGCCGAGGAAGTTTCCGATGAAGAGCTTCCAGC
ACCGCAGCGGGCTGAATTGCCAGAGGATGCTGAAGTAATCTCGGAGGATG
AACTGCCCGCCAGTAATAACAATAACACCGCCACTGAGCCCAAGGCACCT
TTGAAGCGCAAGGCGGAAAACGAAAGCGTTAAGAGCACCGAAGATAAGGA
TGCAAGCAGTCATGAATCAAGCACAAAGGATAAATCCTCCGAGCAATATA
ATCCGGGCAGTCCCACATCTGAGAGCAACGACGCACAGCCCTCAGAGAAA
AAACTCAAGGTCGAAGAATCGGAGCCCAAGGAGAAAAGAAGGAAAAGGAG
CGCGATAAGATATGAGAAGGATAAGGACAAGATATATAAGATAAGAAAGG
AGCGAAGAGCTGCCGGACCTAGATAGTACTGGAGAGCTGTCAAGAGACTC
CACCGACTTCACCGGCTGGACGTACTTGCTGCATATGTTGACATGAGTCT
GATGCGGAGGCGGCGCGCGAGGCCTACGACCATCTGTCCCCTATCCTACT
GCTACCGATATGGCGCAGTTGCGACTACAGAGGCAGGGCATCAGCCACCT
GCCTATAGGGTTGAGGAGTGCCGGAACTT
UFO03613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1646-RH | 4604 | CG1646-RH | 184..1265 | 8..1067 | 4850 | 97.8 | Plus |
| CG1646-RE | 3582 | CG1646-RE | 361..1442 | 8..1067 | 4850 | 97.8 | Plus |
| CG1646-RC | 3573 | CG1646-RC | 352..1433 | 8..1067 | 4850 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28812743..28813551 | 8..816 | 4045 | 100 | Plus |
| 3R | 32079331 | 3R | 28813616..28813809 | 815..993 | 310 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:46:48 has no hits.
UFO03613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:05 Download gff for
UFO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1646-RC | 331..1407 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:32 Download gff for
UFO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1646-RC | 344..1420 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:38 Download gff for
UFO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1646-RC | 344..1420 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:38 Download gff for
UFO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28812735..28813551 | 1..816 | 99 | -> | Plus |
| 3R | 28813618..28813814 | 817..997 | 91 | -> | Plus |
| 3R | 28813881..28813943 | 998..1055 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:32 Download gff for
UFO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24638457..24639273 | 1..816 | 99 | -> | Plus |
| arm_3R | 24639340..24639536 | 817..997 | 91 | -> | Plus |
| arm_3R | 24639603..24639665 | 998..1055 | 92 | | Plus |
