UFO03616.5prime Sequence
1103 bp (1011 high quality bases) assembled on 2009-02-04
> UFO03616.5prime
CAGTCGACATGGATTCCGATTTGTACGATGAGTTTGGCAACTATATTGGC
CCCGATTTAGACAGCGACGAGGAAGATGAGCAAAGTATTTATGGGCAACC
CGATGTGCAGGATGACCCAGAGGACGCCATGGACGAGGACGAGGTGGAGC
CACAGGAGGACGAGGACAAGGAGGTGACCGCCGTGGTTTTGCACGAGGAC
AAACGCTACTATCCGTCAGCAGTTGAGGTCTACGGCCCGGATGTGGAGAC
CATTGTCCAGGAGGAGGACGCCCAGCCGCTGGACAAGCCGCTTATAGAGC
CAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCAAGACATGCAGGAGACC
ACCTACGACATGGAGTTCATGGCCGATCTCATGGACACTCCGCCGCTTAT
TCGCAACGTGGCTTTGGTTGGCCACCTGCACCACGGCAAGACCACCTTTG
TCGACTGCCTCATCCGGCAGACGCATCCGCAATTTGAGACCATGGAGGAG
CGCCAGTTGCGCTACACGGACACCCTGTTCACGGAACAGGAACGCGGCTG
CAGCATCAAGGCCACGCCGGTCACACTTGTCCTGCAGGATGTCAAACAGA
AGAGCTACTTGCTGAACATCTTCGACACCCCGGGGCATGTCAACTTCTCG
GACGAGGCCACCGCCGCCATGCGAATGAGCGATGGTGTCGTGCTGTTCAT
CGATGCCGCCGAGGGCGTCATGCTCAACACGGAGCGACTGCTCAAGCACG
CGGTGCAAGAGCGCCAGGCTATCACCGTTTGCATAAACAAGATTGATCGC
CTCATCCTGGAGCTGAAATTGCCGCCCCAGGACGCCTACTTTAAGTTGAA
ACACATTGTGGAGGAGTCAATGGGCTGCTGAGCACCTATGGCGCTCCAGA
TGACATCTCTTAGTTTCGCCTATTTTGGGCAACGTGTGCTTCGCAGCTCG
TTGTACGGATTTGTTCACTCTGAAATCCTTTGCCAAGCTGTTGAGACCAC
TATGAGGGAGTGCTTACCTGGACTTGCAAGCGGTCTGGGTGACATGTACT
TCACAGTAAAACGCGCCAGTTCCGAGAAGCAGCCGCACATCGGCAGCACT
TGT
UFO03616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4849-RA | 3123 | CG4849-RA | 147..1243 | 8..1089 | 5065 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27963860..27964530 | 121..791 | 3355 | 100 | Plus |
| 3R | 32079331 | 3R | 27961214..27961427 | 121..334 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 27963687..27963802 | 8..123 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 27961041..27961156 | 8..123 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 27964587..27964680 | 790..882 | 420 | 98.9 | Plus |
| 3R | 32079331 | 3R | 27964738..27964889 | 881..1025 | 405 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:10:13 has no hits.
UFO03616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:04 Download gff for
UFO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 146..1252 | 8..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:33 Download gff for
UFO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 147..1253 | 8..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:59 Download gff for
UFO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 147..1253 | 8..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:59 Download gff for
UFO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27963687..27963801 | 8..122 | 100 | -> | Plus |
| 3R | 27963862..27964530 | 123..791 | 100 | -> | Plus |
| 3R | 27964589..27964680 | 792..882 | 98 | -> | Plus |
| 3R | 27964740..27964937 | 883..1070 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:33 Download gff for
UFO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23789409..23789523 | 8..122 | 100 | -> | Plus |
| arm_3R | 23789584..23790252 | 123..791 | 100 | -> | Plus |
| arm_3R | 23790311..23790402 | 792..882 | 98 | -> | Plus |
| arm_3R | 23790462..23790659 | 883..1070 | 91 | -> | Plus |
