UFO03619.5prime Sequence
1172 bp (1087 high quality bases) assembled on 2009-02-04
> UFO03619.5prime
CAGTCGACATGTTCGTTTACCTCAGCAAAAAGATTGCCATACCCAATAAT
GTGAAGCTCAATTGCATCGCTTGGAATAAGGAGGAGGGCTACATCGCAGT
GGCCGGAACGGATGGACTGCTTAAGGTCCTGAAACTGGACCAGGCCACTC
CCAACGGACAGAGCAAGGGCGGGCTGGCCGCCGTTTCCAATTTGTCGATG
AACCAGACCCTGGATGGGCACAAGGAGTCGGTGCGGGTGGTCACCTGGAA
CGATGCGCAGCAGAAGCTGACCTCCTCGGACACGGACGGTGTGATCATGG
TGTGGATGCTGTACAAGGGATCCTGGTACGAGGAGATGACCAACGACAGA
AAGAAGTCCACGGTGGCCAGCATGAGCTGGACGTCGGACGGATCGCGGAT
CTGCATCGTCTATGAGGATGGGGCGATTATAGTGGGCTCAGTGGATGGCA
ACCGCATCTTTGGCAAGGAGCTGAAGGGCACCCATCTGACTGGCGTGCAG
TGGAGTCCGGACAATCGGCTAATCCTCTTTGCGCTGGCCAACGGGGAGTG
TCATCTGTACGATAACCAAGGCAACTTTGCTATGAAGCTGCACATCCAGT
GCGTGAACATAAGTGGCGGCTCCTCCTCCAGAGGTCACCGCATAGCCAGC
ATCTGCTGGTTCAGTGGCAGGGTCGTCCAGAGTCGAAAGCGTCCAGTTCT
GGCCATTTGCTATGAGAACGGAAGGGTGCAGATCATGAGGAACGAAAATG
ACGACGCACCCGCAATCTTCGACACTGGGATGCGCAATGTGGACGCCAAG
TGGAACCATGATGGCACTGTGTTGGCCATTTGTGGCACCACCTTGGACGC
GGTAAGTCCGACTTCGCAGCGCGACACCAACCAGGTGTGCTTCTACTCGC
CGCTGGGCAAGATCTACCGCACTCTGAAGGTGCCTGGCACCGACATCACC
TCGCTTAGCTGGGAGGCAAATCGCTGCGCATCGCCATGGCCGTGATTCGT
TCATCTACTTCGCCAACATCCGACCGGACTACATCTGGTGTTACTTCGAG
AAGACTGTGGTGTTCCTGAACAGCGGCAGTGCAACCAGGGATTGGCCGTA
ACGTGATACCCTCTTGGAACCCCGTCTCAAATCAGGTTTCCTCAGGAAGT
TGAGACCCACCTTGGCTTGGAT
UFO03619.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oseg4-RB | 3878 | CG2069-RB | 179..1339 | 9..1164 | 5470 | 98.5 | Plus |
| Oseg4-RA | 4131 | CG2069-RA | 179..1339 | 9..1164 | 5470 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1734721..1735158 | 581..144 | 2190 | 100 | Minus |
| 3L | 28110227 | 3L | 1734021..1734434 | 1164..756 | 1615 | 94.9 | Minus |
| 3L | 28110227 | 3L | 1734487..1734661 | 756..582 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 1735403..1735516 | 144..31 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:59 has no hits.
UFO03619.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:02 Download gff for
UFO03619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg4-RA | 167..1334 | 9..1170 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:01 Download gff for
UFO03619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg4-RA | 179..1346 | 9..1170 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:38 Download gff for
UFO03619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg4-RA | 179..1346 | 9..1170 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:38 Download gff for
UFO03619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1734014..1734433 | 757..1170 | 95 | <- | Minus |
| 3L | 1734487..1734661 | 582..756 | 100 | <- | Minus |
| 3L | 1734721..1735157 | 145..581 | 100 | <- | Minus |
| 3L | 1735403..1735514 | 33..144 | 100 | <- | Minus |
| 3L | 1735566..1735589 | 9..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:01 Download gff for
UFO03619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1734014..1734433 | 757..1170 | 95 | <- | Minus |
| arm_3L | 1734487..1734661 | 582..756 | 100 | <- | Minus |
| arm_3L | 1734721..1735157 | 145..581 | 100 | <- | Minus |
| arm_3L | 1735403..1735514 | 33..144 | 100 | <- | Minus |
| arm_3L | 1735566..1735589 | 9..32 | 100 | | Minus |
