UFO03620.5prime Sequence
1141 bp (1037 high quality bases) assembled on 2009-02-04
> UFO03620.5prime
CAGTCGACATGGACTTCCACATACTGATCGTCATCGGTTGTGTGGTCAGC
GCCTCGCTGCTCTCGTTCCTGTTCATCAACAAGATCTTCCGGCGCAAGAC
TTTTGAGGAGGTGGTAGCCGAGAAGCGTGCCCTGAGCGCCAATCTCTACA
AGGCGGCCGGTGGTGCCGCTACCAAGAAGCCCAAGAAGAAGGAACTTAAG
CGCGAAAAGAAGCAACGTCAGCGGGAACAGCAGAGGGATGTGAACAACGA
GCCGGAACCAGAGGAAGCCGAAGACTACTCCGATGGTCAGTCGGAGGGTC
AGGGCTCCGTGGCTGGCGAGGAACCCGGTCTCTCCAAGCAGCATGTTGAA
TTTGAACCCGATGCAGAGGTCCTCACTGATCAGCGACGACCCAGTAGCGT
GGCTGAGAAGGAGAACCAACCTTCTGGGGCTGGCAAAAAGGGAAAGAAGG
ATAAACGTAACGGAGCCAACAACAAGACAGCCGGAATCCTGGTCAACAAG
AACGAAACTGTTGCTGTTAAGCCTGCAGCTAACGCCGAGGAGACACCAAC
TTTGAATAATTTTGAAACCAAGATCCCCAAGGATGTGGTGGAGCTGAAGA
AGCAAGAGCAAAAGGAACGCAAAGAAGACAACAACAACAAGCAGCAAAGT
CAGAAAAAGATCGCCGGAGGCAATGTGTCCAAGAAGGAGAAGGTCGTAGC
TGTCGAAACAGAGGCACCCGTAGTGACCAAGCAGATCCTCAAGCAACAGC
AGCAGCAGCAGAATGGCTCACCCAAAACGCAACACAACCAGGCCAACAAC
AAAACCAAGCAGCAGCAGCAAAACAAGAAACAGAATCAAAAGGAAACCCT
AACGGGTAAGGATTTGGCTCATGCTTTGGATAAACTGGCCGATCACCAGA
ACCAGACCATTGGTGTCAACGCTCTGATGAACGTATTTTCTCGTGCCGAG
CTAATCGCTCAGAGATTCAGATACTCATCGACTATTTTGCTAAACAGCAA
CAGGATATGCCCGCCTTCGCACTCTGGAGTGGTCGGATGACCTCTTGCCA
GAACTCAAGCGTCACTGTAAGAGAAAGAAAGCTGTTGTGCCGAGAACAGG
AGGCTCCATCGGATTCAGGGCTAACTTCCGGAACATACGCC
UFO03620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alt-RI | 3834 | CG18212-RI | 118..1252 | 9..1141 | 5205 | 98 | Plus |
| alt-RH | 3909 | CG18212-RH | 289..1423 | 9..1141 | 5205 | 98 | Plus |
| alt-RB | 3282 | CG18212-RB | 116..1250 | 9..1141 | 5205 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17677049..17678120 | 1080..9 | 4945 | 98.2 | Minus |
Blast to na_te.dros performed 2014-11-28 21:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2436 | 705..837 | 199 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6849 | 698..844 | 187 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6834 | 742..844 | 178 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6921 | 629..823 | 177 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6902 | 698..846 | 171 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6876 | 707..838 | 170 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1153 | 730..826 | 149 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2405 | 741..845 | 139 | 61.9 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4611 | 740..845 | 133 | 66.4 | Plus |
UFO03620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:28 Download gff for
UFO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alt-RG | 208..1330 | 9..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:37 Download gff for
UFO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alt-RB | 116..1238 | 9..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:41 Download gff for
UFO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alt-RB | 116..1238 | 9..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:41 Download gff for
UFO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17676986..17678120 | 9..1141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:37 Download gff for
UFO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13502708..13503842 | 9..1141 | 97 | | Minus |
