UFO03621.5prime Sequence
1122 bp (1036 high quality bases) assembled on 2009-02-04
> UFO03621.5prime
CAGTCGACATGGTCTTCGGTGCTATGTTGCTGACGGGCAACGGGCTCAAA
GGTCCCAAACAGCAGCAACAGCAACATCAGCAGGAGCCGCAGCAGCAGCA
GCAGCAATCGCAACAGCAGCAGCAAGAGCAAAAGAAACCGGCGCCCATTA
AATCCTCCAGCAAGGAGCAGGAAACGCAGCCCATTGCAGCCGGGTATTAT
GCCCTCGGCATACGCATACCCAAATCTCCATCGTTTCACAGCGGCCTAGA
TCAGCTGGCCGACGACGAGTTGGACGATCAGGTGCAGGATCAGCAGCAGG
AGCAGCAACAGACCGGCAGCCGATTCAGGTTTAGCAGCGTGGAGGAGCTA
AAGGCCAAGTTCGAGGGGCGGAAAACGCCCCTCTCACCGCCAGAGGCAGC
AGCAGGAGGAGCAGCCGGATCCGGAGCACCCACCACATCCTCCTCACCAT
CGTCCTCGTCCACCAGCTCCAATTCGTCGGCCTCGGCCCTGTCCTCGCTT
TCACAGGCGGCCTCATCCTCGCTAGCCTCGGCGGCTGCTAACTCCTCGGC
CTCATCCTCGGCCGCCACATACGGTGGTGGAGCGAATTCGGCTGCAGCTG
CACTGATTGCCTCCTCGCCATTTGGATCGCAGTCCTCCACTTCTTCGCTC
TCGCTATCCTCGAATGCCGGCATGTCGAAGAACGCGGCAGGAGCAGGATC
TGGATCTGGATCTGGAACAACGTCAACGGGCGCTGCTAGCGGCAGCAATT
CACTTGTGTCCACTTTGGCACAACATTTCTCGGCGGCCACATCCGCCGCA
GCATCGGCGGCAGCCGCTGCGGCATCCTCTGCCTCGGCGGCGTCCTCCTC
GTCAGCTTCCTCCTCATCCACCGCCACCAACACGCAGCCAGCAGCTCCAT
CGCCGCAGCAAGTCACCTGTGAGCGCGGCCGCGGCCATAAAGACATACTG
AATGCCACCAGGAGTTGTGGGTTACTATTGCTGCGGCGGCGGTAGCAGCG
GCGGCCACCTCCTTCCTCATCATCCCATCCTCTGGCGGCAGTTGTGGCCG
TCGTTCGCCGCCCACGCCCGTCGCGCTGTTCCCTACCACTAGCGATGTGA
CCCAAAAGAGGATAGCCTTCGA
UFO03621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RB | 3549 | CG7913-RB | 266..1354 | 9..1099 | 5045 | 98.1 | Plus |
| PP2A-B'-RA | 3269 | CG7913-RA | 266..1354 | 9..1099 | 5045 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18173285..18174183 | 9..906 | 4445 | 99.9 | Plus |
| 3R | 32079331 | 3R | 18174538..18174722 | 911..1099 | 345 | 88.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2530 | 250..471 | 149 | 54.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1133 | 263..338 | 112 | 62.3 | Plus |
UFO03621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:27 Download gff for
UFO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RB | 258..1324 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:24 Download gff for
UFO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RA | 258..1324 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:20 Download gff for
UFO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RA | 258..1324 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:20 Download gff for
UFO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18173277..18174190 | 1..912 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:24 Download gff for
UFO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13998999..13999912 | 1..912 | 99 | -> | Plus |
