UFO03622.5prime Sequence
1133 bp (1006 high quality bases) assembled on 2009-02-04
> UFO03622.5prime
CAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGACCTCCGGC
ATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAGATGCAGCC
AACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATCAACGGCCA
CGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACGCCAATCCC
AGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTGACCACAGT
GACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGTCGTGATGT
ACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTCTACAGTAT
TCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAGACCAATCT
GAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTACCTGCAGA
ATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGCTCGACGCC
ATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTACGGCAGTGA
CTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCTGTATGCCC
GCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTCTGCTGAAG
CCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATACCAGTTGC
CGTCAAGGACACCATGCAGCAAATTGTGCCCACGGAGTTGGTGCAGCAGA
TCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGGACAGACGT
TCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCAAGCGGCTGC
GGCGGGCCTGACAAATCGCAGTTACTTCCTGCAGCCCTCGCCGCAACTGG
TCGCTGGTGGTAGCTCAACAGGCAGTGTAGCTGTTCCTCTTCGGCGACCA
GCTTCTTCGACAGCATCCTGTTCGTCGGTGGCCTCATCCTCGTTGGTGCC
CCGCAAGGCGGCAGTCGTTCCTCACGCCACCAACGGACTGGCAAACGATC
GGCCCCGCCCAGCAAGCAATTGCAAACAAATTGGTCCGGTGATGGGCGTG
TCAATGGAGCGGGCAAGCCTCCAGCGGTTCGAT
UFO03622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smg-RE | 4465 | CG5263-RE | 283..1404 | 5..1133 | 5275 | 98.4 | Plus |
| smg-RD | 4927 | CG5263-RD | 336..1457 | 5..1133 | 5275 | 98.4 | Plus |
| smg-RC | 4562 | CG5263-RC | 380..1501 | 5..1133 | 5275 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8994372..8995471 | 1109..5 | 5045 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:46 has no hits.
UFO03622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:07 Download gff for
UFO03622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smg-RC | 377..1501 | 1..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:13 Download gff for
UFO03622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smg-RC | 377..1501 | 1..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:50 Download gff for
UFO03622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smg-RC | 377..1501 | 1..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:50 Download gff for
UFO03622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8994350..8995474 | 1..1133 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:13 Download gff for
UFO03622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8987450..8988574 | 1..1133 | 98 | | Minus |
