UFO03624.5prime Sequence
1112 bp (1008 high quality bases) assembled on 2009-02-04
> UFO03624.5prime
CAGTCGACATGGTTGTGGTGGCCCATCGTCGTATTCGTATAACAGGTCAG
GTGGTAGAGGACGTGCCACCTCCTAAGCCCGCTGAAGATCAAAGCACTGA
TCAAGCGGATGCGGCACCTATAAAATCAAGATCCGACCCAGCCCGAAAGC
CCCGTGGCCGAATTCCCAGGAGTCGGACCGGAAAATCACGTGAATCGGCG
GCTGCTGAAGAACTTATACAAAACCAGACTCTGGAGCCGCCACTGAAATC
AGGCAAAGTCGAGTCATCGAGCTTGCCAAAGCCTCCAACAGAAGAAAAGA
TAGTGGAACCTGAGACTGGTGCCAAAGAAAATGTTAATCAATCTGCGCCC
AGCGCCCAACCTGTTCTTATTGTTGAAGTGGAGAACGTAAAGCAACCGAT
CTATAAACAAACGGAAGAGGTGAAGGCATTAACTCAGGAGATAATCAAGA
CTCTTCGGGACATAATCACAATGAATCCCTTGTATAGAGAGAGTCTACAG
CAGATGCTGCACCAAAATCAACGAGTTGTCGACAACCCCATTTATCTGTG
CGATTTAGGAGCATCCCTTTCCGCTGGAGAACCAGCTGAGCTGCAAAAAA
TTCTTGAGGAAACAGATATCCCAGAACGTCTACAATTGGCCTTAACTTTA
CTCAAAAAGGAGTTGGAACTCTCCAGGCTCCAACAAAAAATTGGACGCGA
AGTAGAGGAAAAAGTCAAGCAGCAACATCGCAAATATATACTCCAGGAAC
AGTTGAAAGTCATCAAAAAAGAACTGGGCATCGAAAAAGACGACAAGGAT
GCCATTTGGTGAAAAGTACCGCGAAAAGCTGAAGGATAAAGTGGTTCCCG
AAGCTATTATGACGGTTATTGATGAAGACTCACCAAGCTGACTTCCTGGA
GAGTCATAGTTCCGAGTTTAATGTAACTCGCAATTACCTCGACTGGCTTA
CTTCCCTACCTTTGGGGCGTTTTCAGCACCGAAAATTTTCTGCCTGAGAA
GGCCACTGAACACTAAACGACGATCCACTACGAATGAGATATTCAGGAGC
GTATTTTTAGATTTATTTGGCGTTCAAGTTCCTTCAAAGGCCCCTTCACG
CCAGGACAGAGA
UFO03624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lon-RA | 3707 | CG8798-RA | 639..1701 | 8..1067 | 4925 | 98.2 | Plus |
| Lon-RC | 3761 | CG8798-RC | 766..1755 | 81..1067 | 4560 | 98.1 | Plus |
| Lon-RC | 3761 | CG8798-RC | 639..712 | 8..81 | 370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19610802..19611208 | 487..81 | 2035 | 100 | Minus |
| 3L | 28110227 | 3L | 19610252..19610556 | 921..618 | 1365 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19610615..19610746 | 617..486 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 19611325..19611398 | 81..8 | 370 | 100 | Minus |
| 3L | 28110227 | 3L | 19610085..19610193 | 1025..917 | 315 | 90 | Minus |
Blast to na_te.dros performed 2014-11-28 21:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 978..1073 | 375..469 | 143 | 64.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3722..3797 | 376..451 | 128 | 63.2 | Plus |
UFO03624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:06 Download gff for
UFO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8798-RA | 628..1672 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:35 Download gff for
UFO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RA | 634..1678 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:40 Download gff for
UFO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RA | 634..1678 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:40 Download gff for
UFO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19610064..19610188 | 922..1045 | 91 | <- | Minus |
| 3L | 19610252..19610556 | 618..921 | 98 | <- | Minus |
| 3L | 19610615..19610744 | 488..617 | 100 | <- | Minus |
| 3L | 19610802..19611207 | 82..487 | 100 | <- | Minus |
| 3L | 19611325..19611403 | 1..81 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:35 Download gff for
UFO03624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19603164..19603288 | 922..1045 | 91 | <- | Minus |
| arm_3L | 19603352..19603656 | 618..921 | 98 | <- | Minus |
| arm_3L | 19603715..19603844 | 488..617 | 100 | <- | Minus |
| arm_3L | 19603902..19604307 | 82..487 | 100 | <- | Minus |
| arm_3L | 19604425..19604503 | 1..81 | 96 | | Minus |
