UFO03625.5prime Sequence
1117 bp (1029 high quality bases) assembled on 2009-02-04
> UFO03625.5prime
CAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAACGCCCGAG
TGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATGCTGTATTT
GGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGACGTGCTGA
AGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACTGCGACAAG
GAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCGGAGGCCAC
GCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCATCGAGGAGT
CGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATGCCGCCTTG
CCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAGTTCTACCT
GAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACACCGGCTTTC
GTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACACCGGTGCC
AAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACCAACAAGGA
CATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGGCGAACTGG
AAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTACCACCGCTG
GGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTCTTCTCCGG
CAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCATCTTCCACG
AGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACCGCGGTCCC
CTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATCTACGGCTG
GCGGTCGTCTGGCGTTAATCATGTCCTGATCTTCGAGCTGGATCCGCGAA
ATCATCTATCCGAGCAGCATCTCATGGAACTGGCGGCGATCTTCGCGTGA
TCTGGACCCTCAGCATGCTGAGCTTTCTTGTACAGCGCTAGCTGCATCCG
GCTTTCATCATCCACTACGCTACGCCTGATATGGTGCTGTTTTTGCCAAA
TCGGTTCAGTGGACCTATCACGACGCACGATTCTTGCGTGGGCGGAATAC
GCACGATGTGTGTCGCA
UFO03625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7536-RD | 3537 | CG7536-RD | 721..1837 | 8..1115 | 5070 | 97.8 | Plus |
| CG7536-RC | 3494 | CG7536-RC | 306..1422 | 8..1115 | 5070 | 97.8 | Plus |
| CG7536-RA | 3019 | CG7536-RA | 357..1473 | 8..1115 | 5070 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18080744..18081391 | 1115..477 | 2485 | 95.1 | Minus |
| X | 23542271 | X | 18081743..18082143 | 476..76 | 2005 | 100 | Minus |
| 3L | 28110227 | 3L | 5919889..5920445 | 934..375 | 420 | 72.5 | Minus |
| X | 23542271 | X | 18082218..18082288 | 78..8 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 5920582..5920753 | 247..76 | 290 | 77.9 | Minus |
| 3L | 28110227 | 3L | 5921136..5921209 | 78..5 | 265 | 90.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:51 has no hits.
UFO03625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:23 Download gff for
UFO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7536-RA | 350..1473 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:41 Download gff for
UFO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7536-RA | 350..1473 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:43 Download gff for
UFO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7536-RA | 350..1473 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:43 Download gff for
UFO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18080742..18081391 | 477..1116 | 96 | <- | Minus |
| X | 18081743..18082141 | 78..476 | 100 | <- | Minus |
| X | 18082219..18082291 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:41 Download gff for
UFO03625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17974775..17975424 | 477..1116 | 96 | <- | Minus |
| arm_X | 17975776..17976174 | 78..476 | 100 | <- | Minus |
| arm_X | 17976252..17976324 | 1..77 | 94 | | Minus |
