UFO03632.5prime Sequence
1135 bp (1029 high quality bases) assembled on 2009-02-04
> UFO03632.5prime
CAGTCGACATGAAAACCTCTGGCGCCAGCAATACTGACGAGCTGAACAAG
TCATCGCACAGCAAAGTCAGCAAAAAGTCCACTAAGTCGCGATCTAAGTC
GGCGAAATTGGAGTTGACTGGAAAGAATTCCCTGTCGGCATCCGCATCAT
CCTCCATCGCATCCGCAGTGAGCGGGGGCGTTGCAGTGGGCAGCCTGCCG
GCCACGCCCACTCACCTAAACATGGTGACAACGCCCACCACGCCAACATC
TAGTCTGGGTAACTACAATCTGTTTGACGCCTCATTTGCGGTAGCAGGAA
GTGGTGGGCACGGACTTGCAGGCGGCATCGCGGGCGCAGAAGCCTCTGGC
AACTCCAGTCGAATGGGTCATCAGAAGAGCTATGCTGGTTTCGATCCGCG
CAGCATCAAGATCTTTTGGGAGCAGCACGACCAGACCGATGTGGAACTCT
CCCAGGATGTGTGCGCCCGTTTGGCGGAAGATGCCTCCTACAAAGTCTGG
GAGCTGATCAATAATGTCAAAATATACTCGCGCCACTCGGGCGGAGTGGT
GACATACGACCTGGTGAACGAAGTGCTAAAAGATGCCGATGTGCCGCCTA
TGCTGGGTGCGATGGACAGCGACTGGGACCGGATCGACTATGACGGCAGT
TTTTACTTTCACTCGGATAAGATCTTCGAGCTGAGCGCGGAGTTTCAGAA
GGAAGTCAATCTGTGCACACCTGATGATGCAGACTTTCAGAGCATCTGCC
CAGTGGAGGATAAGCACATGGACCAACTAAGACAGTGTGTCCAGAGTCTT
GTGACGGCAGCCCTTTTTGCGGACAGCAAATCCCAGACGGCCGCCGTCTG
CCATGCTTTTCAGACACCCCTGATGGGATCTATCTACCGAGTGATTGTGA
GTAAGATGGTCCAGTTGCTAGCCTTTAAGCAGCAGGACCATTTGAGCCAG
CGATGCTGGCGACTGCTCCGAGCATGCAACTACAACGCCACTGCTAATCA
CATGCCTGCCGGCCGGAGTTCTTCCACCTGGCGAGGTACTGGTCAGCAGC
TTATGGCAGTTACGAACTTCAAAGCTTCCCACGTCGACCAGATCCGGACA
ACCCCTCCATTCAATGGATTGAAAAGAACTAGGTT
UFO03632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RA | 2416 | CG3883-RA | 120..1256 | 9..1131 | 5225 | 98.1 | Plus |
| Saf6-RB | 2407 | CG3883-RB | 120..1247 | 9..1131 | 5080 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 814685..815221 | 1047..513 | 2555 | 99.3 | Minus |
| 2L | 23513712 | 2L | 815474..815831 | 366..9 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 815275..815422 | 512..365 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:11 has no hits.
UFO03632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:21 Download gff for
UFO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-RA | 116..1182 | 2..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:30 Download gff for
UFO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..1181 | 2..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:56 Download gff for
UFO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..1181 | 2..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:56 Download gff for
UFO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 814655..815221 | 513..1074 | 98 | <- | Minus |
| 2L | 815275..815421 | 366..512 | 100 | <- | Minus |
| 2L | 815475..815836 | 2..365 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:30 Download gff for
UFO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 814655..815221 | 513..1074 | 98 | <- | Minus |
| arm_2L | 815275..815421 | 366..512 | 100 | <- | Minus |
| arm_2L | 815475..815836 | 2..365 | 98 | | Minus |
