UFO03633.5prime Sequence
1137 bp (1029 high quality bases) assembled on 2009-02-04
> UFO03633.5prime
CAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGAGCTGCTAT
GTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAATGACTACAG
TCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAAGCGTATCA
TCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAAACACAGTT
GGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCCCATGTACA
ACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGGTGATGGCA
GCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATTTCGGACCT
GAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACATCGGCGGC
TGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCCCGTGTTCT
TTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGATCGCCGGA
CTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCGCTGGCCTA
CGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAACGTGATCT
TTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTGCCTTCACC
AAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATCGGTGGACG
CGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTTCCAGGAGC
GTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGCGCCTGTTA
ACCGAAATCGAAAAGCTGAAGAAGCAGATGTCCGCCAACAGCACCAAGCT
GCCGTTGAACATTGAGTGCTTCTTGGATGATATCGACGTCTCGTCGTCCA
TGCAGCGGTCGCAGATGGAGGAGCTGTGCGCCCCGTCTTGCAGCGCGTCG
AGCAGACTTTCAAGCGTTTGCTAGCCGAGTCTAAGCTGCAGCTGGACGAC
ATTCACTCCGTGGGAGATCGTTGGGCGGAAGCCCCACGCATTCCGTGCGT
AAGCAGCTTATGGAGCAGGTCTTAACAGGCGGCTAGGACCCACTCTTAAC
AGAACAAGAGCTGTGTCTCCGCGGGAGAAGCCCTTCA
UFO03633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70Cb-RI | 3590 | CG6603-RI | 561..1687 | 9..1137 | 5250 | 98.2 | Plus |
| Hsc70Cb-RH | 3258 | CG6603-RH | 260..1386 | 9..1137 | 5250 | 98.2 | Plus |
| Hsc70Cb-RG | 3283 | CG6603-RG | 285..1411 | 9..1137 | 5250 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14039048..14040001 | 116..1070 | 4490 | 99.2 | Plus |
| 3L | 28110227 | 3L | 14037644..14037750 | 9..115 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:50 has no hits.
UFO03633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:20 Download gff for
UFO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RC | 382..1487 | 2..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:29 Download gff for
UFO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RG | 277..1382 | 2..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:48 Download gff for
UFO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RG | 277..1382 | 2..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:48 Download gff for
UFO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14037636..14037750 | 2..115 | 96 | -> | Plus |
| 3L | 14039048..14040001 | 116..1070 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:29 Download gff for
UFO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14030736..14030850 | 2..115 | 96 | -> | Plus |
| arm_3L | 14032148..14033101 | 116..1070 | 99 | | Plus |
