UFO03634.5prime Sequence
1120 bp (1030 high quality bases) assembled on 2009-02-04
> UFO03634.5prime
CAGTCGACATGTGGAACATGATGTGCGACGTAATGCCCACGATATCCGAG
GATAGCATCTCGCAGCGCTCCTCGCAGTTTAGCGGGGAGGATGCCAACTT
TGAGCAGCTGATGGTCTCCATGCTGGACGAGCGGGACAAGCTGATGGACA
GCCTGAGGGAGGCGCAGGAGCGGCTTAACGAGACGGAGAACAAGCTGCGT
GACGTCGAGAAGGAGCGGGACAGCCTGCAGCGACAGATTAACGCTAATCT
GCCGCAAGAGTTTGCCACCCTGACCAAGGAGCTGACGCAAGCGCGGGAGA
CCCTTTTGGAACGTGACGAGGAGATTGGGGAGCTCAAGGCGGAGAGGAAT
AATACCAGGCTTCTCCTCGAACATCTGGAGTGCTTGGTGTCCCGCCACGA
GCGTTCCCTGCGTATGACCGTTGTGAAGCGACAGGCTGCCGCCCAGAGCG
GCGTCTCCAGCGAGGTGGAAGTGCTCAAGGCGCTAAAGTCGCTGTTCGAG
CACCACAAGGCGCTGGACGAGAAGGTGCGCGAGCGGTTGCGGCTTTCCAT
CGAGAAGAACAACATGATGGAAGAGGAACTCAGCTCTGCCAAGGAGGAAC
TGGCCCAGTACAAGGCGGGCGTGGTGCCAGCTGGCGTGGGCAGTGGCAGC
GGAGCAGGGAGTGCCGCAACCACCGCCGGTGGTGGGGGCGCCGAGAACGG
GCTCAAAGAGAAGATGGCGGGCGTGGGCGGATCTGGTGGCGTTAATGGCG
AGGCAAATGAGCTGAACGACTACGCAGCCAAAACCCACGAGCTGCAAACC
ATTATTGAGAAGCAGACCTCGGAACTTTCACAATGGCAGCGACGCGTTTC
TGATTTGAACAACAAGATTAGTGAGCTTGAGGAGAACATGTCGCGAGTGC
AAAAGGAACACTGCAAGGCCCAAGACCAGTGTGCCAAGCTGCAGCGGGAT
CTGCGCGAGAATGTTGCCCAGAAAGAGGATCAGAGAGCGCATTACCACAT
TGGAAAGCGATACCTGAATGCTCAGAGGGGAGTCTACATCGTTGCATGAT
TCTCACGAGAACTCGAGCAGGACTACGGCTAAGAGGGCAGCTCAGCTGCC
GAAGGAAAAGAATCGCCCAT
UFO03634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-alpha-RE | 4466 | CG11199-RE | 204..1302 | 9..1099 | 5205 | 98.9 | Plus |
| Liprin-alpha-RD | 4949 | CG11199-RD | 420..1518 | 9..1099 | 5205 | 98.9 | Plus |
| Liprin-alpha-RA | 4466 | CG11199-RA | 204..1302 | 9..1099 | 5205 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6725775..6726129 | 359..713 | 1775 | 100 | Plus |
| 2L | 23513712 | 2L | 6724848..6725097 | 9..258 | 1250 | 100 | Plus |
| 2L | 23513712 | 2L | 6726370..6726540 | 813..983 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 6726200..6726303 | 712..815 | 520 | 100 | Plus |
| 2L | 23513712 | 2L | 6725158..6725259 | 258..359 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 6726602..6726690 | 985..1072 | 240 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:54 has no hits.
UFO03634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:26 Download gff for
UFO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RA | 200..1305 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:12 Download gff for
UFO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RA | 204..1309 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:58 Download gff for
UFO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RA | 204..1309 | 9..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:58 Download gff for
UFO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6724848..6725096 | 9..257 | 100 | -> | Plus |
| 2L | 6725158..6725259 | 258..359 | 100 | -> | Plus |
| 2L | 6725776..6726129 | 360..713 | 100 | -> | Plus |
| 2L | 6726202..6726303 | 714..815 | 100 | -> | Plus |
| 2L | 6726373..6726540 | 816..983 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:12 Download gff for
UFO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6724848..6725096 | 9..257 | 100 | -> | Plus |
| arm_2L | 6725158..6725259 | 258..359 | 100 | -> | Plus |
| arm_2L | 6725776..6726129 | 360..713 | 100 | -> | Plus |
| arm_2L | 6726202..6726303 | 714..815 | 100 | -> | Plus |
| arm_2L | 6726373..6726540 | 816..983 | 100 | -> | Plus |
