UFO03635.5prime Sequence
1119 bp (1015 high quality bases) assembled on 2009-02-04
> UFO03635.5prime
CAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGCACGCGCTG
ATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGCGTGATCTT
CGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCGGGAGGCGC
TTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGCAGCTGGCC
GAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAACGTCACGGA
CATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTACGTGCTGC
CGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCGGCTTCAAT
CCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGGCTGATGGG
CGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCTCAGCGAGA
ACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGTTCCACAGC
TTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAACTTCGCCTT
TCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCATCGGAAGGA
TCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCTTCGCCATG
TCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCCACCTTCAT
CTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGCGAGCGCGC
TGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGCTGTCGCAC
CTGCTGGGCCACGCTCTCGCCTTTGTAATGTCGCACGGCAACAGCCAGCT
GCTTCTCACCTGGCAGCTGAGCATCTCGCTGTTCCTATTTTTGATTACAA
TGGTGCGACAGTTGCGTCACGTGCGCAGCCGGCGACTGGGACACGCGCAG
GATCTGCTGAACGGCGACTTAATTCCTCGTTGAAGTTCCTCATGCTACCA
CTGCTGCTCGCCAGCAGCGTGCAGACCACGCTTGATTAAACTCTCTCAAT
CGGGCCTGGCGTGGTCAGTGTGGACGGAAGGCGACCAGCAGCCTTCTTTC
GACATAGTGACCAACTGGC
UFO03635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6659-RA | 3356 | CG6659-RA | 144..1235 | 9..1106 | 5220 | 98.8 | Plus |
| CG6659-RB | 3426 | CG6659-RB | 259..1305 | 54..1106 | 4995 | 98.8 | Plus |
| CG6659-RB | 3426 | CG6659-RB | 92..138 | 9..55 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18655809..18656271 | 1106..638 | 1930 | 96.6 | Minus |
| X | 23542271 | X | 18656324..18656645 | 638..317 | 1610 | 100 | Minus |
| X | 23542271 | X | 18656711..18656976 | 319..54 | 1330 | 100 | Minus |
| X | 23542271 | X | 18657097..18657143 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:55 has no hits.
UFO03635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:25 Download gff for
UFO03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..1247 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:33 Download gff for
UFO03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..1247 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:52 Download gff for
UFO03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..1247 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:52 Download gff for
UFO03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18656714..18656975 | 55..316 | 100 | <- | Minus |
| X | 18657098..18657150 | 1..54 | 94 | | Minus |
| X | 18655797..18656270 | 639..1118 | 96 | <- | Minus |
| X | 18656324..18656645 | 317..638 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:33 Download gff for
UFO03635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18549830..18550303 | 639..1118 | 96 | <- | Minus |
| arm_X | 18550357..18550678 | 317..638 | 100 | <- | Minus |
| arm_X | 18550747..18551008 | 55..316 | 100 | <- | Minus |
| arm_X | 18551131..18551183 | 1..54 | 94 | | Minus |
