UFO03636.5prime Sequence
1106 bp (1015 high quality bases) assembled on 2009-02-04
> UFO03636.5prime
CAGTCGACATGACGCACGTAAACAATGGGGAAGTAATGGAAAAGGAGATG
GAGCCAACGGGAGAGCGAGAGAGAGACAGGGAGACTGCTGCCGGCAGCGG
GGTCCATCATCGATTTTTAGCCAGTGCATCGGAGCGAGATGCCAATAGCG
GGAATGCATTGGAAGCTGCAGCGACAAAAACAAAAACAGGCACAACGATT
ACCAACTTGGAAGACTTGGCCTTTGAGGCATGCCAAAATTGGTCGGATTT
GCACCAAGACTTCTTCATCACGGACGATGAACTTGAGTACGAGGATGAAC
TCTCTTTGGGCAGCAGCATAGGTGGAAACATTGCAACAACAACGACAGCA
GATGCAGCAGTAGAGGGTCTTATAACGGGAGAACATCAGAACGAGCAGCT
GCTGATGGAAGTTCTATGCGGCAACCGCGTTAGCCAAATGACTCGGGCGT
ACGATGACATTGAGGCCGTGACGCGACTGCTGGAGGAGAAGGAGAAGGAC
CTAGAGCTGACCGTGCAGATTGGCAAAGAGCTGCTCACCCAGAACAATGC
ACTCGAGGCACGGGTCGCGGATCTGGAAACCGATCTCAAGGCCTCCAACG
ACGATCGTGCCCAGCTGGTCCACGAGCTGCACAAGAAGAACGAGCTCATC
TCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGACACTCCCAC
CATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAGGTCAACTCCC
TGCTCGACGAGAACAAGTCTCTGAAATGCGAAGCCACCCAACTGGCCCAC
CAGACGGACGAGGTGGAGGAGCACGAGCGCCAGCTGATGGCCGATATCAG
TGCTCAGCTAAACGATGCTAACTCACAGTACGACAACCTCAGTTTGGAGT
TGGAACGGCAGCGGGAGGAAACCGGCTGCACATGAGCAGATCGTGAACTG
ACCGCTCGCTAGCGGAGGCGAAATGCGACTACACCACTGACGCAGAACAA
CGACGAACATCTCTCGCTGCTGCACGTGACGAAGAAAACCAATGCTTTAC
CTGAACTGGTGGAGTTCAGCAGCGTTACGAAAGGTGCTTGCCTCTGCCTG
CACTCT
UFO03636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| milt-RB | 3873 | CG43227-RB | 214..1323 | 9..1106 | 5120 | 98.2 | Plus |
| milt-RF | 5469 | CG43227-RF | 1047..1756 | 409..1106 | 3120 | 97.2 | Plus |
| milt-RD | 5535 | CG43227-RD | 1113..1822 | 409..1106 | 3120 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7050581..7050983 | 9..411 | 2015 | 100 | Plus |
| 2L | 23513712 | 2L | 7051759..7052108 | 690..1033 | 1420 | 97.7 | Plus |
| 2L | 23513712 | 2L | 7051365..7051645 | 410..690 | 1405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3630..3743 | 868..753 | 125 | 57.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2365 | 310..362 | 116 | 71.7 | Plus |
UFO03636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:24 Download gff for
UFO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| milt-RB | 348..1465 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:11 Download gff for
UFO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| milt-RB | 206..1323 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:03 Download gff for
UFO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| milt-RB | 206..1323 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:03 Download gff for
UFO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7050573..7050983 | 1..411 | 99 | -> | Plus |
| 2L | 7051367..7051645 | 412..690 | 100 | -> | Plus |
| 2L | 7051760..7052187 | 691..1106 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:11 Download gff for
UFO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7050573..7050983 | 1..411 | 99 | -> | Plus |
| arm_2L | 7051367..7051645 | 412..690 | 100 | -> | Plus |
| arm_2L | 7051760..7052187 | 691..1106 | 95 | | Plus |
