UFO03637.5prime Sequence
1108 bp (1017 high quality bases) assembled on 2009-02-04
> UFO03637.5prime
CAGTCGACATGGCCGCTGTGCTGCCGGAAAACGCGGCCGAGATCGCGGTG
GCCAATGCAATCAATAACATCAACGGGAATGGAAATGGGAACGGGCGCAA
TCGGGTGCTACCTGGCGGATTAGGTGGTGGTGGCCAGAACAACATGATGA
ATATGCGGGATCGACTGTTCCATGCCATATACTTTCGGGCGGCGGCCACC
TATGCGGAGTTGGTTCCAAGGAAGGTGCAGTTGACCATTGAGTTCCTGCT
GCTGGCCAAGGCCTTGCTGTTCTTCTTTACGCTCATCTACGTGCACAACT
CCTTCATCAAGAATCCCTGCACTTGCCTGCAGGATGTTAAGAACTGGCCG
CGCGAAGGCGTCATCAGAGTGGAAATTATTCCTCACCTGGCGGAGAAGCG
TGCAATTTGGCAGGGAATTAAAAGGGACCAAGAAATAGTGCGCTCCCTCA
AGGATTCCTACTACTATGGTATTGGACCCCAAACTCGTCAAAATCACGAA
ACGCTTAAACGGTACGAGTCCATTCTGGGAAAACTGGGTCTGCCCGTCCG
ACCAACATTCGCTTACAGTAACGAATCCCTGTACTACTACTTTGATGCCA
TCAACATCCTGGACACCTACGACCATCCAAATGCAATACAGCTCAAGAAC
GAAGAGGATGATGAAGAGCAGTACATTGTGGAGTATTCATTGGAATACGG
CCACCTCCGCTTGTCTTCATCCACGCGAAAGCGTCTACGCATACCCGTAC
TCACTGTCCAACTGGATCCCAATACGGACAAGTGTTTTGGGGACAGTTTG
ACGCGATATCTGCTCAAACGTTTGCTAGGCTATGATGACTTACTAATGGC
ATCCGTACGAACAATAGCCGAGCAGGAGGAAAATAAGGCTACCTGCGCAA
TGTTATAACCGGCGAACATTATCGCTTCGTCTCCATGTGGTGGGCCAGCC
TGGAGCAGTACCCGGCTGCCTTCTGTTGTTATGTTACTATTCACGTTCTC
AGTGTCGATGTTGCTGCCCTACTCACACCACAGATCTTTGGTGTTTATAG
TCGAACTGCTGCGAATGCTGAGATCAACGTGGTCTCCCGGTTTCCGATCG
CACCCGTT
UFO03637.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8405-RB | 4466 | CG8405-RB | 146..1243 | 8..1104 | 5150 | 98.4 | Plus |
| CG8405-RA | 3169 | CG8405-RA | 146..1243 | 8..1104 | 5150 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16048493..16048695 | 461..663 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 16048753..16048919 | 663..829 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 16048130..16048278 | 219..367 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 16047793..16047922 | 8..137 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 16048983..16049146 | 829..992 | 630 | 97.6 | Plus |
| 2R | 25286936 | 2R | 16048334..16048429 | 365..460 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 16047981..16048067 | 135..221 | 435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 498..571 | 256..326 | 120 | 64.9 | Plus |
UFO03637.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:17 Download gff for
UFO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8405-RA | 118..1192 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:03 Download gff for
UFO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8405-RA | 142..1216 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:15 Download gff for
UFO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8405-RA | 142..1216 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:15 Download gff for
UFO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16048132..16048278 | 221..367 | 100 | -> | Plus |
| 2R | 16048337..16048429 | 368..460 | 100 | -> | Plus |
| 2R | 16048493..16048695 | 461..663 | 100 | -> | Plus |
| 2R | 16048754..16048919 | 664..829 | 100 | -> | Plus |
| 2R | 16048984..16049146 | 830..992 | 97 | -> | Plus |
| 2R | 16049204..16049261 | 993..1050 | 94 | -> | Plus |
| 2R | 16047789..16047922 | 1..137 | 97 | -> | Plus |
| 2R | 16047984..16048066 | 138..220 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:03 Download gff for
UFO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11936489..11936651 | 830..992 | 97 | -> | Plus |
| arm_2R | 11936709..11936766 | 993..1050 | 94 | -> | Plus |
| arm_2R | 11935294..11935427 | 1..137 | 97 | -> | Plus |
| arm_2R | 11935489..11935571 | 138..220 | 100 | -> | Plus |
| arm_2R | 11935637..11935783 | 221..367 | 100 | -> | Plus |
| arm_2R | 11935842..11935934 | 368..460 | 100 | -> | Plus |
| arm_2R | 11935998..11936200 | 461..663 | 100 | -> | Plus |
| arm_2R | 11936259..11936424 | 664..829 | 100 | -> | Plus |
