UFO03639.5prime Sequence
1130 bp (1014 high quality bases) assembled on 2009-02-04
> UFO03639.5prime
CAGTCGACATGATGGCGCGTCGCGGTGGAAAGCGCATACGTATGGATGAT
CCGCCGCCGGACTACGAGGAATTGCACAGCGATGCCCTGAATGAGAGCAC
CTCGGATGCGGACAGCCCCACCAAACGGATGACCAGGCTCAGAGCGCGGG
GCGGAGTGCGGGACAAACCGCCCATAATTGATGATGACGAGGATGACTTC
TTCGCGCCAATCGCGCGCAAACGAAAGACTCCCGCCACCCGCAAGGGGCC
AACAGAACGCAAGGAACGCGTTGAACGACCGCGCAAGGAGCCCGTCGACA
AGGGACATCACGAGCGGATAGACAGTGAGCGGGAGATAACCACGGACGAG
AATAGTCTCTACTATATTGTGCGACACTCGAAGAACCCTATTGCTAGCAT
TGTTGACCAATGGATTGAGCAGTATAAGGCAAACCGAGAAACGGCCCTGG
TTGCACTGATGCAGTTTTTTATTAATGCTAGTGGTTGCAAGGGAAAGATA
TCCGAGGACATTCAGTATCCTGTTGATCACACATCAATTATCCGACGGAT
GACCGAAGAGTTTGACGAAGAAAGCGGCGAATATCCCTTGATCATGAGCG
GAACGCAGTGGCGAAAGTTTAAAAATAATTTCTGCGATTTTGTGCAAACC
CTTGTGAAGCAATGCCAGTACTCTATTATCTACGACCAGTTTCTGATGGA
CAACGTCATATCCCTGCTTACGGGCCTCTCCGATTCGCAGGTGCGAGCTT
TTCGACACACAGCCACTCTGGCGGCCATGAAGTTGATGACGGCTTTGGTG
GATGTCGCCCTATTGGTTTCGAATAACTTTGACAATGCTGCGAAGCAATT
CGAAGCTGACGCGTTAAGTCCCGAGATCGTCGTGCTTCTGACCGTTTGGA
CTCGCTTATGACTAAACGTTCGAATTGGAAGAGAATATGGACGAGATAAG
AGCATGTTGACCTACATGTCAAGTCGGTGTCGTTCACGCTACAGAGACAG
TCTGCTGATATACGAGCATATGTATGGCGGAGATCGGCATCTGGATGGAA
AACTATCGCAAACTTCTGACCGACTCTTTACTAAATATCGGTGGACGCTG
CACACAAGAATTCGAAGGTTGCCTGCAGTG
UFO03639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SA-RA | 3634 | CG3423-RA | 119..1235 | 9..1109 | 5105 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6950671..6950988 | 78..395 | 1590 | 100 | Plus |
| 2L | 23513712 | 2L | 6951274..6951563 | 570..859 | 1450 | 100 | Plus |
| 2L | 23513712 | 2L | 6951045..6951223 | 396..574 | 880 | 99.4 | Plus |
| 2L | 23513712 | 2L | 6951621..6951822 | 863..1057 | 630 | 95.5 | Plus |
| 2L | 23513712 | 2L | 6950539..6950609 | 9..79 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:08 has no hits.
UFO03639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:16 Download gff for
UFO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SA-RA | 94..1222 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:05 Download gff for
UFO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SA-RA | 113..1241 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:00 Download gff for
UFO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SA-RA | 113..1241 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:00 Download gff for
UFO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6950673..6950988 | 80..395 | 100 | -> | Plus |
| 2L | 6951045..6951218 | 396..569 | 100 | -> | Plus |
| 2L | 6951274..6951573 | 570..868 | 99 | -> | Plus |
| 2L | 6951627..6951888 | 869..1117 | 91 | | Plus |
| 2L | 6950533..6950609 | 1..79 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:05 Download gff for
UFO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6950533..6950609 | 1..79 | 94 | -> | Plus |
| arm_2L | 6950673..6950988 | 80..395 | 100 | -> | Plus |
| arm_2L | 6951045..6951218 | 396..569 | 100 | -> | Plus |
| arm_2L | 6951274..6951573 | 570..868 | 99 | -> | Plus |
| arm_2L | 6951627..6951888 | 869..1117 | 91 | | Plus |
