UFO03642.5prime Sequence
1136 bp (1034 high quality bases) assembled on 2009-02-04
> UFO03642.5prime
CAGTCGACATGATGATGGAGAACGGACTCTCCATGGAGTACGGAGATGGC
TACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTCGATCCTGC
GTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAACAGCCATT
TGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACTTCCGCAAC
GGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAGACGCTCCC
CAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAACGTGAACA
AGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCTCTATCGGC
GCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGTATGATCTG
GACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGAGGAGATGA
CCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGGCTCCCTAC
AAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGATGGTCTGGC
CTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGACTACGCCA
AGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCTTCGATGTG
GCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGATGATCTCCA
GAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGTGTCCTCGT
ACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACCGCTGCCAACCGG
ATCTGCAAGGTGCTCAAGGTCAACCAGGAGAACGAACGCCTCATGGAGGA
GTACGAGCGTCTGGCCAGTGATTTGCTGGAGTGATCCGTCGCACCATGCC
CTGGTTGAACTCGCGCCAGGCCGACACTCGCTGGCAGGGGTGCAGAAGAA
GCTGGGAGGAGTACCGCACCTACCGTCGCAGCACCAAGCCACCACGTGGT
GGAGCAAGAGGCCAGCTGGAGAACCAACTTCAACACGCTGCAGAACAGCT
GGCGCTGTTCAACCGGGCCGCCTACTGGCCCCGAGGCAAGACCGTGTTCC
GAACTCTCAAATCGTGAAGGGCTGGACTGGCGAAAG
UFO03642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn-RF | 3877 | CG4376-RF | 399..1528 | 9..1131 | 5055 | 97.4 | Plus |
| Actn-RA | 3511 | CG4376-RA | 399..1528 | 9..1131 | 5055 | 97.4 | Plus |
| Actn-RI | 3516 | CG4376-RI | 404..1533 | 9..1131 | 4590 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2030442..2030861 | 540..121 | 2100 | 100 | Minus |
| X | 23542271 | X | 2030215..2030370 | 693..538 | 780 | 100 | Minus |
| X | 23542271 | X | 2034955..2035068 | 122..9 | 570 | 100 | Minus |
| X | 23542271 | X | 2027668..2027871 | 1075..873 | 490 | 90.3 | Minus |
| X | 23542271 | X | 2027935..2028033 | 872..774 | 480 | 99 | Minus |
| X | 23542271 | X | 2028664..2028751 | 780..693 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:16 has no hits.
UFO03642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:03 Download gff for
UFO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1510 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:08 Download gff for
UFO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1510 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:49 Download gff for
UFO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1510 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:49 Download gff for
UFO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2027935..2028027 | 780..872 | 100 | <- | Minus |
| X | 2028665..2028750 | 694..779 | 100 | <- | Minus |
| X | 2030215..2030368 | 540..693 | 100 | <- | Minus |
| X | 2030443..2030859 | 123..539 | 100 | <- | Minus |
| X | 2034955..2035074 | 1..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:08 Download gff for
UFO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1921968..1922060 | 780..872 | 100 | <- | Minus |
| arm_X | 1922698..1922783 | 694..779 | 100 | <- | Minus |
| arm_X | 1924248..1924401 | 540..693 | 100 | <- | Minus |
| arm_X | 1924476..1924892 | 123..539 | 100 | <- | Minus |
| arm_X | 1928988..1929107 | 1..122 | 96 | | Minus |
