UFO03646.5prime Sequence
1113 bp (1025 high quality bases) assembled on 2009-02-04
> UFO03646.5prime
CAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGGTTGTAAAA
ACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCTGGAATAAA
AGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCCCGAGCAGC
TCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACACCCTTCAG
ATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATTAAGGCGCC
GACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGTGCGCCAAA
CGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGGAGGCACTT
GGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATGCAGAACGA
GCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAACCCGATGG
TGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTATCACGTCC
AATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATCTCGCATAT
GCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGCCCGCAATC
CCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCATGTCGAAT
CTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATCTACCGCGA
TATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGGTCGCAACC
CCTTTGCCGGCCTGGTCGACGGCGGCGGTTCACGAGCCGGCAACAACCCG
CAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGGGGCGGTGC
CAATTCGGGAACCAATGGAACAGTCGGTGGCTCCGGCGCCGGCAATCCGA
CGGGGATCTGCCGCCGAACATGTGCTCACACGCCGGCCATGCGAGCCTGC
TCCAGCAGATGGCGACAATCCAGCCATGATGCAGACTGCTGAACGCGCCC
CTACACAGCGTTCCATGATGGAGTCCATGTTCCAGACCGGACATGCGCGC
GCTTGCTGACACATCCGCTCATGTCTAACAATCCGCCTGCAGGACAGTGC
GTTCGATGATGCG
UFO03646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubqn-RB | 3429 | CG14224-RB | 189..1313 | 4..1112 | 5065 | 97.7 | Plus |
| Ubqn-RA | 3011 | CG14224-RA | 189..1313 | 4..1112 | 5065 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19684440..19685370 | 105..1030 | 4235 | 98.9 | Plus |
| X | 23542271 | X | 19683996..19684096 | 4..104 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:47 has no hits.
UFO03646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:19 Download gff for
UFO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubqn-RA | 247..1363 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:09 Download gff for
UFO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubqn-RA | 187..1303 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:00 Download gff for
UFO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubqn-RA | 187..1303 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:00 Download gff for
UFO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19683994..19684096 | 1..104 | 98 | -> | Plus |
| X | 19684440..19685453 | 105..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:09 Download gff for
UFO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19578027..19578129 | 1..104 | 98 | -> | Plus |
| arm_X | 19578473..19579486 | 105..1102 | 97 | | Plus |
