UFO03648.5prime Sequence
1089 bp (977 high quality bases) assembled on 2009-02-04
> UFO03648.5prime
CAGTCGACATGACTGTGATAATGGTGGACGGGTTCGCCCTGTGGCTGCTC
TACAAGCTGTTCCTGTCTCCCTGCTGCCTTCTCCTGTGGCACGTGCTTAA
ACTGTCTACCGTCCTCTTTACCTTTGCAGACAATAACGGCGCCCGCAAGC
AAGCGGAGCACCCGAACAATCAGTCGCACCACATCAACCACCACAATCAT
CAGCATCCGACAAGCAATCCCAATGAGCTGCCCAAGCCGAAGAGGGTCCT
CTATCCGCGGGAGAACATACGCATTGGCTGGAAGCAGTCGGAGCGCAAAT
GGCAGGTGGGCACGGGCATGATCAATGTGGGCAACACCTGCTACCTCAAC
TCAACGCTTCAGGCGCTCCTGCACATACCCGCCCTGGCCAATTGGCTCGT
TTCGGAGCAGGCGCATCTGGCTGACTGCAATGTGGCCGAACCTGGCAGCG
GTTGCATCATTTGCGCCATGACCAAAACACTTTTGGCCACCCAAAGCAAT
CAGTCGGCCGTCAGACCCTTCCTCATCTACTCGAAGCTAAAGCAGATCTG
CAAACACATGGTCGTTGGTCGCCAAGAGGATGCGCACGAGTTCCTGCGCT
TCCTGGTCGAGGCCATGGAGCGGGCGTATTTGATGCGGTTTCGTAACTAC
AAAGAGCTGGATCAGTTGGTTAAGGAGACCACGCCGCTGGGACAGATCTT
TGGCGGCTATCTGCGCAGCGAGGTGCGCTGTCTGAGCTGCAACCATGTGT
CCATTACGTTTCAGCACTTCCAGGATCTGTTGCTCGACATCCGCAAGGCA
GACTCCTTGGAGGATGCTTTCGAGGGACACTTTTCTCGCGAACGGCTAGA
GGATATGGGCTACAAGTGCGAGGGATGCAAGAAGAAGTATCTGCCACAAG
CAATTCTCTTTGGAGCGGTGCCCCAATCACGCTTTGTATACAGCTGAAGC
GATTCTCCATGATCGGCCAACAACTGACAAGCAGATTTCTTTCAAGTCAA
CGCATAGAATTGAGCAAATACGCAGCCCGTTTACAGCAGCTCAGCTCAAC
GCTTCACCTTATCGCTGGGGTCAATGTCACTCACTGGGG
UFO03648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-RJ | 4538 | CG5505-RJ | 333..1417 | 9..1089 | 5010 | 98.2 | Plus |
| scny-RB | 3512 | CG5505-RB | 333..1417 | 9..1089 | 5010 | 98.2 | Plus |
| scny-RI | 3644 | CG5505-RI | 150..1116 | 127..1089 | 4420 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5771497..5772375 | 9..887 | 4395 | 100 | Plus |
| 3L | 28110227 | 3L | 5772433..5772581 | 887..1035 | 465 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:50 has no hits.
UFO03648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:18 Download gff for
UFO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usp36-RE | 333..1399 | 9..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:59 Download gff for
UFO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RB | 333..1399 | 9..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:50 Download gff for
UFO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RB | 333..1399 | 9..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:50 Download gff for
UFO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5771497..5772375 | 9..887 | 100 | -> | Plus |
| 3L | 5772433..5772585 | 888..1039 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:59 Download gff for
UFO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5765533..5765685 | 888..1039 | 92 | -> | Plus |
| arm_3L | 5764597..5765475 | 9..887 | 100 | -> | Plus |
