UFO03649.5prime Sequence
1128 bp (1016 high quality bases) assembled on 2009-02-04
> UFO03649.5prime
CAGTCGACATGGAGGAATCGCACGACTTCCAGTTCGTCCTTCCCCTGAAT
GCATCTGATCTGATCAACTCCAGCGGAGATCAGTATTACGTGAAGGAGAT
TTTTGGCGCCCAGGAGATTCCCGCGAAACTACAAGAATGCAAGCGCAAAG
TGCACTTGGGCGATCCTTTTTATATATTCGAGCACTTCGACTTGTATTAC
TCGATCATCGAGGCCCGCGGTTCAGATGGCGCCTCTGCACAGAATCTAAT
GAGGTCCTTTGACCTGCTCTACCTGACCGTGGAGAAACTGTTCCAAGACT
TGCAGCCCCTGCTGACGGCCAGTGAGCCCATGTCTAACCAGCAGCGCAAT
AGTTACCTCAACCTGACCAAAATGACGCTGTTCCTCCAGGTGAGCACCGT
CAAGAAGATCAACAACAGTGTCCAGCAGGCCATGCGGGATCAGCAGCTCA
ATGTTCAGAAGAAGCGTGCCAAGCCATCGGAGGGATTGGAGCAGTTTCCC
AACTGGGAGGTTAAGCGCGGCAAGTTCTTGGTGCAGCTCTTCAACGTGCT
GCAGTGCCCGCTGGAGAAGCTCTGGAGTCCGCCCGTAGCCGAGGAGGACT
TTATAAATTTGCTCTGCGACCCCTGCTATCGAACAATCGAACTTTTGCCG
CTTCGCATGGACAACAAACACGTATTCGACACGATCTTCCAGATCTTGGG
CACATCGATCAAGCGCTTTAACCAGGCCATGACCTTCCCGGTGCGCATTC
TGCAGATCCTACGCGGTACCGAGCATGCAGCCCATTCAGTAGCAGCTGGA
ATTTTGCTTCTGCACGAGGAGTACGGAATTTCTTCGGTCTTCTCCATTCT
AATCAAGAGCATTGTGGATGCTCTAAAGATGGACAGTTCTGACTCTTCGG
TGTCCAAACACTTCTCCATTTCCTGGCCGAGTTCTCGAACATAGCACCTT
CGCTGATCGTACCGCAACCTGAAAAGCTGGCGAGATTTACTAGATTGTCA
GTTCTCACACGCTGCGAATGTGTGCCTCAGATCATCGGCGAACCCGTGTA
AGCGAACTGAACTCGGAGAATCTTACGAATAACTGAGAGATACGCTACGA
GTCTTGAACCTATGTCCACTCTATACAT
UFO03649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-D2-RA | 4301 | CG1911-RA | 79..1163 | 8..1086 | 5070 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29675932..29676405 | 134..607 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 29676466..29676938 | 608..1075 | 1925 | 96.2 | Plus |
| 3R | 32079331 | 3R | 29675729..29675856 | 8..135 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:14:18 has no hits.
UFO03649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:58 Download gff for
UFO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-D2-RA | 47..1140 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:25 Download gff for
UFO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-D2-RA | 72..1165 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:15 Download gff for
UFO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-D2-RA | 72..1165 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:15 Download gff for
UFO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29675722..29675856 | 1..135 | 97 | -> | Plus |
| 3R | 29675934..29676405 | 136..607 | 100 | -> | Plus |
| 3R | 29676466..29676952 | 608..1089 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:25 Download gff for
UFO03649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25501444..25501578 | 1..135 | 97 | -> | Plus |
| arm_3R | 25501656..25502127 | 136..607 | 100 | -> | Plus |
| arm_3R | 25502188..25502674 | 608..1089 | 95 | | Plus |
