UFO03650.5prime Sequence
875 bp (13 high quality bases) assembled on 2009-02-04
> UFO03650.5prime
CAATCCACATGTTAATCGCGCTCTTCGCGCTTGCACGCTTGCCGATCTTT
CATAAGACTCCTTGGTCTTCCTCCTCCTCCCCGCCGCCGTCTGTCCACCG
GTTTCCCAGGTGTGGCAAAGCTGATACGGATTACCATCCCCCGCCTCCAA
ACCCCGGCTTCCTTGTTACTGCTTCACCCATTGAGGCCCTTTCCGGGATG
AGCAACACCGCCGAACAGGACAACCCGATTGCCGACGACGGCAATGCGGC
ACATCCCCAGGAAATTGAAGTCATCCATTTCCAAGCGCAAGACAAGCAGA
GTTGCCGCGTTATTACATCCAATAAGACCAAGGTCCTCACATCCGGCGGC
GTTCACACACACGGTTCCTCCAAGGGCAAGCTAAAGAACATCGTCGACTA
CAAGTGGGAGCGCAAGTACTACTATCCGGGGCACCTGGTCGCTGTCCACC
GCGATGGCAAGCACCTGGCGTACGCCATTAATGTCAACAACAAAACCACC
GGAATGGAGGGCATGGTGCGCGTATGCAACATAACCACCAGTATGCGAGC
CTTGATCAAGGGAATGAGCGGCGAGGTCTTAGATCTGCAGTTTGCCCATA
CGGATTGTGAGCGTATATTATCTGTGATCGATGTCAGTTCGCTGTTTGTC
TACAAAGTCGATCATGTCTAATGGAACCTGCTGTGCAATCTAGAGCTAAA
GGTGGAGGACCCCATCGCCAACTATGTGCCGGAGTACAATATGGTCTCCT
GGTGTCCCTATGTCTGCAGCAGCACCACACCGGTACAATCTACGATGATG
ACGATGAGATCCGCTGCTCATTTGGGCGCGAAGCTCTCAATTTCATGCTT
TGAGGGGAGAGATTGTCTCTGAACT
UFO03650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ge-1-RB | 4932 | CG6181-RB | 330..1200 | 9..874 | 3240 | 91.8 | Plus |
| Ge-1-RA | 4646 | CG6181-RA | 247..1117 | 9..874 | 3240 | 91.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11099391..11099755 | 845..483 | 1470 | 94.8 | Minus |
| 2L | 23513712 | 2L | 11100017..11100225 | 483..275 | 955 | 97.1 | Minus |
| 2L | 23513712 | 2L | 11100294..11100559 | 274..9 | 730 | 85 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:34 has no hits.
UFO03650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:57 Download gff for
UFO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RB | 306..1164 | 6..863 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:36 Download gff for
UFO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 245..1103 | 6..863 | 91 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:22 Download gff for
UFO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 245..1103 | 6..863 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:22 Download gff for
UFO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11099373..11099754 | 484..863 | 93 | <- | Minus |
| 2L | 11100017..11100225 | 275..483 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:36 Download gff for
UFO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11100017..11100225 | 275..483 | 97 | <- | Minus |
| arm_2L | 11099373..11099754 | 484..863 | 93 | <- | Minus |
