UFO03651.5prime Sequence
1141 bp (1010 high quality bases) assembled on 2009-02-04
> UFO03651.5prime
CAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAAACAACAAG
CCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGCGGTGTGGG
CGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCTGGGCGGTG
GCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTGGACAGAAC
GCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGCGGAAACGG
GATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCCCCAATACA
CAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGCGCTTCGAG
CTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAGGCTCGCAT
TGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAAATCGGATT
TGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGGAGCGTGCG
AAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTCAATGAGTT
CAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGCCACTGACT
CGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGCAGGGGCGT
CAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGACAACATCAT
CGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAACAATAATG
CCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTGGCGGCGGC
ACCGGCGGCGAGAACCTTAGCCCAAACATCAATGGAAACGAGAGCAACAA
ACGCGCATCGGAGACGGAAGGCCGTCATACTCCCGCTAAAAAGTGCAACA
ATCGATCGATGAAATATCGTGACACCGAGCAGCTGTGATGGCGACTTTGA
GTTCCTGGGCGCCACCGAAATGTCCGACGACGACCGAGATTTTCTGACGA
TCTGGAAATGGTGGTCCACCGACCATGACGACACCGACGTAAAGCTGGCA
AGCCCGCCAAGTCTGCAAGATATGCTACCGTAGGAGGTGAACCGCTCGTT
GGAACTGGGTGACTGCCAGCTGACGGTAATAACGAACTGAA
UFO03651.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RC | 3254 | CG7392-RC | 765..1901 | 9..1136 | 5160 | 97.8 | Plus |
| Cka-RD | 3003 | CG7392-RD | 514..1650 | 9..1136 | 5160 | 97.8 | Plus |
| Cka-RB | 5135 | CG7392-RB | 318..1454 | 9..1136 | 5160 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8035817..8036299 | 389..871 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 8032258..8032642 | 9..393 | 1925 | 100 | Plus |
| 2L | 23513712 | 2L | 8036356..8036555 | 869..1065 | 490 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:41 has no hits.
UFO03651.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:56 Download gff for
UFO03651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RD | 355..1495 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:47 Download gff for
UFO03651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RB | 318..1459 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:29 Download gff for
UFO03651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RB | 318..1459 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:29 Download gff for
UFO03651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8036358..8036576 | 871..1084 | 91 | -> | Plus |
| 2L | 8032258..8032641 | 9..392 | 100 | -> | Plus |
| 2L | 8035821..8036298 | 393..870 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:47 Download gff for
UFO03651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8032258..8032641 | 9..392 | 100 | -> | Plus |
| arm_2L | 8035821..8036298 | 393..870 | 100 | -> | Plus |
| arm_2L | 8036358..8036576 | 871..1084 | 91 | -> | Plus |
