UFO03653.5prime Sequence
1104 bp (982 high quality bases) assembled on 2009-02-04
> UFO03653.5prime
CAGTCGACATGTTCAAACGCACTTTTAAGGTGGTCTATCGGCCCATCAGG
AGCAACTTTGTTCTGCTGCCGGATCAGTACTACGGCGTCGTTTCGACCTA
TGACACGGGCTGCCTGAGCTTGCAGTACAATGGTCGGACGCATTACGCCT
CCTGGGCGCCACAAAAGGGCGGCGGCGGCATTAAAGACACCGAGATTGGG
ATCAATGCCAGAGCGGCCAAGGAGATCGGTCTGCACGAGAATGATCTGGT
CAAGTGTGCGCTCATCGCTGACGTTCTCAACCTGCGCAGCGTCCACGTTA
CCCCCGTCTCGTCCAAGGACTGGGAGATCATAGAACTTAGCACTGAAAAG
ATATCGGGCAGTGTGCTGGAACAAACTCGCATAGTGAATTCAACGCAGAT
CCTTATTGTTTGGATTAATAAGTCGATGCAAGTTGCGCTGACAGTGGATC
GTCTGAAGCCGCACATGAACTACGGGAGAATAGATCACAATACGGAACTC
GTGGTGGCGCCCAATCTGTACAAGGGTCTGACCAATGGAACTTCAAATGG
TGTTATAGAGGAAAACACAAAACTCTCCAGAAGTAAAACCACTGCCCAGG
TCAAGGATGAGCTGACTGAAAAGTTAACACCGTTGACCCATTCCTCCACG
GTGTCCAATGTGAAAAATACTATTCAGCGTAACAAGCGTCAGGATCACAT
GGAGCGTCTTAAAAAGGACTTGCGCCGCGAAAGCTCGCGTAGCTTCGAAT
TTCGTGTCATTCGAGGTCTATGGCGGGAGCAGGCCCAGGAGTCGGATGTG
TTTGTGAACGGAAAGCATCTGCCTGAGTTCTTTGATCTAGATCTATTCTA
TTGCATGCACACCGCAGCCGACAGGATTACTATGTGAGAGTGCGCACAGT
AGAAGACGATATTGAGACGATCTACCAGAAACCATTCATCCATCGATCGA
CTAATGCATCTTATGAAGTTGCTGGGTATTAAGGATGGACGAGTGTTTTA
GAACTAAAACTACCGTAGTTAACTTGTAGAAAAAATGGAGCCTATTTGCC
ACAAGAAGACCCACTACAAAATCCTGCAAACGCATTTAGCGATTTGGTAG
ACGA
UFO03653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex1-RA | 3275 | CG6760-RA | 77..1178 | 9..1096 | 5045 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14072931..14073569 | 447..1073 | 2545 | 95.8 | Plus |
| 3L | 28110227 | 3L | 14072135..14072263 | 102..230 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 14072759..14072873 | 333..447 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 14072381..14072486 | 228..333 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 14071968..14072061 | 9..102 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:50 has no hits.
UFO03653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:54 Download gff for
UFO03653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)70Da-RA | 69..1178 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:04 Download gff for
UFO03653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex1-RA | 69..1178 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:38 Download gff for
UFO03653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex1-RA | 69..1178 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:38 Download gff for
UFO03653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14071960..14072060 | 1..101 | 96 | -> | Plus |
| 3L | 14072135..14072261 | 102..228 | 100 | -> | Plus |
| 3L | 14072382..14072485 | 229..332 | 100 | -> | Plus |
| 3L | 14072759..14072873 | 333..447 | 100 | -> | Plus |
| 3L | 14072932..14073594 | 448..1096 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:04 Download gff for
UFO03653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14065060..14065160 | 1..101 | 96 | -> | Plus |
| arm_3L | 14065235..14065361 | 102..228 | 100 | -> | Plus |
| arm_3L | 14065482..14065585 | 229..332 | 100 | -> | Plus |
| arm_3L | 14065859..14065973 | 333..447 | 100 | -> | Plus |
| arm_3L | 14066032..14066694 | 448..1096 | 96 | | Plus |
