UFO03654.5prime Sequence
1113 bp (1019 high quality bases) assembled on 2009-02-04
> UFO03654.5prime
CAGTCGACATGGAGCAGTCTGTGTCCGCCCGCTGGCTGAAGCGCTATCGC
GCATTCTTCCTCATCCTGCTGCTTATCGTGGCCATCCAGTTGTTCCTGGC
CTACAAGTCCCTGGACATCGTAGGCGGCGGTTCCGGTTCCGGATTTGATG
CGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCGCATGCTCAGGCACGGGTC
CAACCGCCCGCCAGGACCAAGCTTACTGCCCAGCAACTGGGCTTCCAGCC
AGAGTGCGACATTCTCGCCAGAGAGGCCATCTCCGCCCTGCAGCGCGCCA
AAACGAAAGACTGTCGAGAACATATCGCGCAGATCGCCTGCGCAATCCAA
GCCGGACGCTTCTATGCGCCGCAGCTCCGGAGCAGCTGTCCAGCTGGTAA
TCACACGGCGAACGTTTCTTTGGGATGCTTCAAGGATGAGAAAGATCGCC
GCCTTCTGGCCGGCTACTACAGCAGCTCCAAGACCTCCAATTCTCCGGCC
AAATGCGTGGAGCTATGTCTGCAAAGCGGTTACCCGTACGCAGGGGTGCA
GTACGGTCGCGAGTGCTTCTGCGGTTACGACCCGCCTCCTAAAGCGTCGA
AGCTGCCGGACTCCAGTTGCAACACCAAGTGCCTGGGCAACGCCAAGGAA
ATCTGCGGCGGATTCTATGCCATGAACATATACGAGACCGGAATAGCCAA
GTTCACCGCTCAACTGGCGGCCACCACTCCTTCGGAGGAAACGAAGCGCG
TGCGGATCGCATTTCTGCTGACGCTCAACGGAAGAGCGCTGCGTCAGGTG
CACCGACTTCTGAAGGCGCTCTATGCACCGGAGCACGTTTACTACATCCA
TGTGGACGAGCGCCAAGATTACCTGTACCGAAAGCTGCTGGAGTTGGAGT
CAAAGTTCCCCACATACGTTTGGCTCGGAAGCGATTCTCCACCATATGGG
GTGGAGCCTCTCTCCTGACCATGCTGCTCCAGTGCATGAGACTACTGCAG
TCCACTGGCACTGGACTTTGTGATCACTACGAAGTGATTTCCAGTGAAGA
CCCTCGACAGTGTGAATTTCTTGAGCGCAATCCTGCAGACTTGTAGTCCC
TGGAAACCAGTCA
UFO03654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 259..1352 | 8..1085 | 5075 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2261715..2262406 | 699..8 | 3460 | 100 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 860..700 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 2260979..2261109 | 988..859 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:08 has no hits.
UFO03654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:53 Download gff for
UFO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 248..1359 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:17 Download gff for
UFO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 251..1362 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:09 Download gff for
UFO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 251..1362 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:09 Download gff for
UFO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2260857..2261107 | 861..1092 | 92 | <- | Minus |
| 3L | 2261453..2261613 | 700..860 | 100 | <- | Minus |
| 3L | 2261715..2262409 | 1..699 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:17 Download gff for
UFO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2260857..2261107 | 861..1092 | 92 | <- | Minus |
| arm_3L | 2261453..2261613 | 700..860 | 100 | <- | Minus |
| arm_3L | 2261715..2262409 | 1..699 | 99 | | Minus |
