UFO03655.5prime Sequence
1132 bp (1030 high quality bases) assembled on 2009-02-04
> UFO03655.5prime
CAGTCGACATGAAACCCACCCAGTTCGGAGGCAGTAGCTCCAAGATGACC
GAGCCAATTGAGTATGTGACGCTAATTAGCGACGATTCCGATGGTGAGCC
CACGCCCAAAAGAAACGTCAATCACCCGCCGTCGGCATTGTCAGCACCCA
ATCCTGGTCAGAAACAAAAGCACCCGGATGAGGACTCAAATGACGCACCT
GCCACCAGCGATGAGCGACGCACAAGTAGGCGCAATCGGCCAAAAGTGGA
TTATAGTAACAGGCCTAGTGGAAGTGGAGACACCGCCTCCAATGACAAGT
CAGGATCGGCATCCATGGGACCTAACAACCAGCAAGCAGAGCGTCGCAGC
CAAAGCCAAACCCGCAAGTCAGAAGCCAATGCTACCTCCTCCTCCGTGTC
CGGACCCAGTGCCGGAAATTCCAGACCGTCCCAGAACGGAGATTCCAAGG
ACCGGGATGCCGGCACGCCCACGGTTTTGTCTGGCCAAGAGGGCGCCGTC
TTCCAATCTCGCCTGCCATTTAACAAAATGACACCCAACGAAGAGGCCTG
CTTTCCGGACATCAGTCGCTCGGGCATTCTCGGCCATCGGGTATTCCTCA
ACATTCGTAACAGCCTCTTGCACATGTGGGTGGACAATCCCAAGATCCAG
CTGAGCTTCGAGATCGCCCTGAAGAACCTGCCGCCGCCATTCGACAGCGA
GCCCAGTTTGGTAAGGCGAGTACACTCGTTTCTGGAGCGTCATGGCTTCA
TTAACTTCGGCATCTTTAAGCGACTTAAGCCTATACCCGCCAAAAAGCTG
GGCAAAGTCATAGTGATTGGGGCAGGGATCTCCGGCTTAGCAGTGGCACA
CCAGTTGCAGCAGTTCGGCATGGATGTGATCGTCTTGAAGCGCGGGATCG
GGTAGGGGACGGATATCTACGTTTCGGAGACAGCTATATTGCCGATGTGG
AGCAATGGTGTTACCGGCGTCTATGGCATCAATGACGATCTCAGCAAGCA
GATCGGTTATGGACTAGTTCCCATCAGCAGACTGTCACTTACGCCAGATG
AAAGCCGTGCCAGATGGAAGACTGATCGAGGAGAATTAACGACTGCTGAA
TCGCAGTACGGTCCACGCCATGAATTTACTAG
UFO03655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-RB | 3615 | CG17149-RB | 370..1485 | 9..1098 | 4905 | 97.3 | Plus |
| Su(var)3-3-RA | 3681 | CG17149-RA | 436..1551 | 9..1098 | 4905 | 97.3 | Plus |
| Su(var)3-3-RC | 3555 | CG17149-RC | 370..1071 | 9..710 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20226816..20227841 | 9..1025 | 4645 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:25 has no hits.
UFO03655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:52 Download gff for
UFO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdm-RB | 308..1361 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:21 Download gff for
UFO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 430..1483 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:42 Download gff for
UFO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 430..1483 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:42 Download gff for
UFO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20226810..20227863 | 1..1043 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:21 Download gff for
UFO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20219910..20220963 | 1..1043 | 98 | | Plus |
