UFO03656.5prime Sequence
1119 bp (1038 high quality bases) assembled on 2009-02-04
> UFO03656.5prime
CAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGGAGCACAAC
ATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCGATGCGTAA
GGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTCCAGCACCC
TGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGCTGGAGTTT
TGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTACGTGTTCAT
CGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGTGTCGTCCG
TGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTACACTGACG
CAGTGCTTCCTCCACATCTCGGGCGCCCACATCAATCCCGCCGTAACCCT
GGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGCCATGTACA
TAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGCTTTATGGC
GTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATCTCACATAG
CGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCATCCTCACCT
TTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGAAGAAGTTC
ATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCCTGCTGCTT
TGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCCTTCGTTTG
TGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGACCACTGGTG
GGCGGCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAACTCGCGCAA
CCGCAACCTGCGCCACAACAAGGGCAGCATCGACAACGATTCCAGTTCGA
TTCACTCGGAGGACGACTGAACTACGACATGGATTTGGAGAAGCCCACAA
GTTTCAGCAGTCGCAGGGCCACCTACCCGCGGGCCAGTCAATTGCCATGG
CGAAGACAGGCGGCCGGAAATGGTCAGCACAAGCTGCCAACATGGCCGAA
TGCCGGGCGTATGGCCAATGCTGTAGGCAATATATGCGCGAATTCGGAAC
TGCTCGCCGCTCTCTGAAT
UFO03656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bib-RB | 3276 | CG4722-RB | 302..1375 | 5..1071 | 5045 | 98.5 | Plus |
| bib-RA | 3276 | CG4722-RA | 302..1375 | 5..1071 | 5045 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9993266..9993637 | 707..1071 | 1310 | 95.7 | Plus |
| 2L | 23513712 | 2L | 9992254..9992462 | 499..707 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 9984946..9985146 | 5..205 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 9986787..9986956 | 204..373 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 9987600..9987727 | 372..499 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:16 has no hits.
UFO03656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:51 Download gff for
UFO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bib-RA | 295..1386 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:13 Download gff for
UFO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bib-RA | 297..1388 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:36 Download gff for
UFO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bib-RA | 297..1388 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:36 Download gff for
UFO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9984941..9985146 | 1..205 | 99 | -> | Plus |
| 2L | 9986789..9986955 | 206..372 | 100 | -> | Plus |
| 2L | 9987601..9987727 | 373..499 | 100 | -> | Plus |
| 2L | 9992255..9992462 | 500..707 | 100 | -> | Plus |
| 2L | 9993267..9993650 | 708..1081 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:13 Download gff for
UFO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9992255..9992462 | 500..707 | 100 | -> | Plus |
| arm_2L | 9984941..9985146 | 1..205 | 99 | -> | Plus |
| arm_2L | 9986789..9986955 | 206..372 | 100 | -> | Plus |
| arm_2L | 9987601..9987727 | 373..499 | 100 | -> | Plus |
| arm_2L | 9993267..9993650 | 708..1081 | 94 | | Plus |
