UFO03658.5prime Sequence
1141 bp (1009 high quality bases) assembled on 2009-02-04
> UFO03658.5prime
CAGTCGACATGATTCTGGAGAATTCGGACAAGCTCAAGGATTGGCTGAGC
GTGGTCCTGGAGCCACTCTGCGATGCGGACTCCTCGGCCTTGGCGCGATA
TGTCATCGCGCTGCTCAAGAAGGACAAATCGGATAAAGACCTTAAGCGGA
TCATGATCGAACAGCTCGATGTTTTCCTGTCCGAGGAGACGACACGTTTC
GTTGAACGCCTCTTCGATGCCATTGCCAGCGAGGAATACCTGACGGTCCC
TGCTGCCCCTCTAATAACAGCCTCTAGTGCATCCACCGCTGAGCTAACAG
TCGACCAGGAACTGGCCCTGGTCATTGATGGGCCCCAGGACGACATCGAA
GCGGTTTTGGTTGCCGATTCCCCTCCACCGCCTCCTAAAGATAATGTGAT
AAAACCCGATAGCAATCAGGTCAAGTTAGAGCAGGCCAGTCAAGATGCCA
GGGAAGCTGAGGCCCTAGCTTTTATCAGCCAGGAAGCCGGCATTGCCATG
CACGTCCCTACAGATGCCAAGCCAGCCTTTGATCATAAAACCAAAGACTC
CCACAATCAACAGTCAGCCTCCAACTACCAACACCATCATGTGCGCAGTG
CCAGCCCACCGGGCAGAAGCAGCGGCGTCAGCGGAAGTGGAGGAGGTGGT
CCCGGCGGAGCAGGTCTTGCGGCGGGTTATGCTGACAAGGAAAACCAGCC
GCGCGACAGTCGACGACGACGTGCTTCCCTGCGATCCCGTTCCCGCTCTC
GATCGCGTTCTAACGAGCGCGCTTTTCGGCGGTCCAGGTCACGCGACCGA
CGGGTGAACGAACGCGAGAAAACTCAACGACAATTCCGTAACAAATCTCC
ACCAGGCTCGCAGACCGACAATCGCCATCATGGTCGGCGCAACTTTGATC
GCCGCGCATCGGTGGCAACGCAGATGATCGTCCTCGATTTGGCAAACAAT
AGAGCCGGCGCTCCTCACAGTCGGTCATGTCACCGAACGAAACGCGCGGC
GCAACCAGAACTCCCCGAACGATACAAACAGTGCAGCTAACCTAATTCCC
GCTCCAGTGGCCGCCGCCCAGGCACTCTGTGAAGCATCCGCTTTCCCAAT
CCTCGTCAGGCCTGCCAGGAACCTTGAACAAAAGCCCTATT
UFO03658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RB | 4114 | CG10084-RB | 331..1443 | 8..1120 | 5085 | 97.8 | Plus |
| swm-RA | 4005 | CG10084-RA | 365..1477 | 8..1120 | 5085 | 97.8 | Plus |
| swm-RD | 3974 | CG10084-RD | 331..1446 | 8..1120 | 5045 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19494033..19494498 | 68..533 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 19494560..19495092 | 534..1061 | 2220 | 97 | Plus |
| 2L | 23513712 | 2L | 19493898..19493957 | 8..67 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:47:33 has no hits.
UFO03658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:01 Download gff for
UFO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RB | 322..1401 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:58 Download gff for
UFO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 359..1438 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:56 Download gff for
UFO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 359..1438 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:56 Download gff for
UFO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19493892..19493957 | 1..67 | 94 | -> | Plus |
| 2L | 19494033..19494498 | 68..533 | 100 | -> | Plus |
| 2L | 19494560..19495107 | 534..1080 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:58 Download gff for
UFO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19493892..19493957 | 1..67 | 94 | -> | Plus |
| arm_2L | 19494033..19494498 | 68..533 | 100 | -> | Plus |
| arm_2L | 19494560..19495107 | 534..1080 | 96 | | Plus |
