UFO03660.5prime Sequence
1137 bp (1023 high quality bases) assembled on 2009-02-04
> UFO03660.5prime
CAGTCGACATGCTACATCAGCAGCAACAACAACAACATCTGCATTGCAGA
AGAAAAGCTACAGCAACAACAACTGCCCGCCTTGTGATATTCAGCAGTCC
TCTTCTACTATTACTACTCACCACCCACTTGCCGCCCACCTTACAAGCGG
ACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCCGCCCCCAATCCGGCG
GGTGGCGTAGCAGGGTCTTCGATCATCGATCAATTCAGTCCGAATTGCAG
TGCTGTGACACACATTTTCCAAGCGAGAGGAATCGATGCCATCGAAATTC
CCCAAAAACCCAGTAACGAACGAGTCCTACGATATTGCGAGTCCCCTTCG
GTGGGCACTTGTTGCACCTACAACATGGAGACCCGCATGGCGATGCAATC
CCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGATCTCTCGTATGTCTG
GAATCCTGGGCAGCAAGGCCACAAAATTCAAAGATATTTTCACGGCCCTG
CTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTTCATCCGAACATACGG
CGTCATTTACGAGAGAAATTCGTACGTCTTCTCGGATCTGTTCAAGGAGT
TGGAAACCTACTTCGCCAACGGTCGCGTGGACTTGCTGGAGGTCATGGAC
AAGTTCTTCAATACGCTATACCAGAAGATGTTCACCGTGCTGAACACCCA
GTACACATTTGATGAAAACTACATGCGATGCGTCAGCGAGCACATGAAGG
AGCTGAAGCCTTTCGGAGATGTTCCGGACAAGCTGTCCGTGCAAATCAAG
CGATCCTTTGTGGCCACGCGCACCTATGGCCAGGCTCTGACCACCGCTTC
GGAGGTGGCGAAGAAGGTCCTCAATGTGCGACTGAATGCCGATTGTACTG
GGGCTTCTTACCAAGATGCAGCCCTGTGGTGCTTGCAAGGGATATACGGA
AAAGCCCTGTACCAACTACTGTGTGAACGTCATCAGGGATGCCTGCACTA
TCAGCCCGAGTTCGAAAGCGATGGGAGACTTTGCATGCCATGGACAAGTG
GCGACGACTGCTGGATCTCACATTGTGATGGTGTGGAGCCACTCACATCA
GATCCCGAGGCATCTGACTCAGGATTCTGCAGGACAT
UFO03660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RC | 3758 | CG32146-RC | 473..1623 | 9..1137 | 5155 | 97.7 | Plus |
| dlp-RA | 3761 | CG32146-RA | 473..1623 | 9..1137 | 5155 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14633073..14633382 | 9..318 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 14664834..14665070 | 482..718 | 1185 | 100 | Plus |
| 3L | 28110227 | 3L | 14664295..14664460 | 318..483 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 14667259..14667417 | 719..877 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 14667475..14667620 | 876..1021 | 590 | 96.6 | Plus |
Blast to na_te.dros performed 2014-11-28 19:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6836 | 12..76 | 160 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2379 | 12..73 | 154 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2427 | 11..73 | 148 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2517 | 15..76 | 144 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6865 | 11..75 | 144 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2472 | 12..73 | 143 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6782 | 13..76 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6803 | 12..76 | 131 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2466 | 11..73 | 130 | 70.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6644 | 15..64 | 128 | 76 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8100 | 15..64 | 128 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1612 | 5..73 | 127 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2860 | 12..71 | 126 | 72.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1132..1163 | 11..42 | 124 | 87.5 | Plus |
UFO03660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:59 Download gff for
UFO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 447..1579 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:32 Download gff for
UFO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 466..1598 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:48 Download gff for
UFO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 466..1598 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:48 Download gff for
UFO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14664836..14665070 | 484..718 | 100 | -> | Plus |
| 3L | 14667259..14667415 | 719..875 | 100 | -> | Plus |
| 3L | 14667475..14667733 | 876..1117 | 91 | | Plus |
| 3L | 14633066..14633382 | 1..318 | 98 | -> | Plus |
| 3L | 14664296..14664460 | 319..483 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:32 Download gff for
UFO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14626166..14626482 | 1..318 | 98 | -> | Plus |
| arm_3L | 14657396..14657560 | 319..483 | 100 | -> | Plus |
| arm_3L | 14657936..14658170 | 484..718 | 100 | -> | Plus |
| arm_3L | 14660359..14660515 | 719..875 | 100 | -> | Plus |
| arm_3L | 14660575..14660833 | 876..1117 | 91 | | Plus |
