UFO03662.5prime Sequence
1131 bp (1033 high quality bases) assembled on 2009-02-04
> UFO03662.5prime
CAGTCGACATGAATCCGAATATGTACGGGCCACCGCCCACGCAGTTCCAG
CAGCAACCCCAGTTTGGGGCTCCTCCTCCGAATTCCGGAGGTTGGCCACC
GCAGCAACAACAACTACCGCAGCAGCAGCCGCCGCAGCAACAACTGCCTC
CGCAGCAGCAGCAACAACAACCACAGTACGGAGCACCACCACCAACGTCG
GCGGCATCCCAGCCTTACCTCAATGGCAACTACCAGCAGCAGTTGGCCAC
GTCGATGGGAGGTTTGAGTGTGGGTGGCGGTGTCGGTGGGGCCAATCCCC
TGAAGCCACCACTCCCCCAAGGAGCTCCCGCTGCTGCGGCACCACCGCCA
ACCGGTTTCAATCAGTTTAACTCTAATGCAGCACCTCCTCCGACCAACAA
CAACAATGCTGCATTCGGTGCTCCACCACCGACGCAAGCTGGAAGTTATG
TCAACGGAGCCCTACCGCCCAGCAGTACTCCACAAAGCGTGGCCAGTGGG
ATTAATCAGATGAGCTTGAACAGCGCCACTTTGGCGGGATTGCCGCACAT
GCCGCCACCGAAAGCGGCAACGCCGGGAGCAGCACCTGGTCAGCCTCCGA
TTCCAGCAGCTGGATCTACTTCTCAGCCGCCTCTACCCGGACAACCGCCA
CTTCCCGGACAGCCACCCTTTTCCGGTCAGATTCCCACATCCCAGCCTGC
CCCAAGTCCGTATGGAGTACCGAGCTCACGACCGGGTCAACCCCAGCTAC
CTCCTGGAGCCACTCCTCCAACTTACACGCAACCCGGATTGCCACCTCAG
CAGCAGCAGGGAATCCCGCCATTGCAGCAGCCAGGGATACCACAGCAGCA
GCCGGGATTTCCCCCACAGCAGCCTGGACTGCCACCACTATCCCAACCCG
GGTTGCCTCCGCAACCAGGAGCGCCTTACGGAGCTCCCCAACAAGGCGGA
TATCAGGTGGCTTTCAGGTCAGGCTCCCGGAGGCTTCCCTGAGCACCTCC
ACCGCTTCAGGTCAGCAGCAGCTGCTTCCGCCGCATCGGAGCTCCACAAC
CTGTTTCGGGCCAGCACGGCTATCCCCCAACGGTCGCAACCGATGCAGAA
TTCGCCACCGAAGCACTGAAGAACGATTCCC
UFO03662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec24CD-RA | 4155 | CG10882-RA | 304..1386 | 9..1079 | 5095 | 98.6 | Plus |
| Sec24CD-RC | 4155 | CG10882-RC | 304..1386 | 9..1079 | 5095 | 98.6 | Plus |
| Sec24CD-RB | 4827 | CG10882-RB | 304..1386 | 9..1079 | 5095 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2235083..2235903 | 1053..239 | 3745 | 99 | Minus |
| 2L | 23513712 | 2L | 2236308..2236541 | 242..9 | 1170 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6913 | 96..242 | 287 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6851 | 791..922 | 130 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6844 | 791..890 | 115 | 59 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 412..702 | 1094..800 | 115 | 57.6 | Minus |
UFO03662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:49 Download gff for
UFO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10882-RA | 281..1368 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:26 Download gff for
UFO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gho-RB | 299..1386 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:35 Download gff for
UFO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec24CD-RB | 299..1386 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:35 Download gff for
UFO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2236308..2236546 | 1..242 | 98 | | Minus |
| 2L | 2235051..2235899 | 243..1079 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:26 Download gff for
UFO03662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2236308..2236546 | 1..242 | 98 | | Minus |
| arm_2L | 2235051..2235899 | 243..1079 | 98 | <- | Minus |
