UFO03664.5prime Sequence
1156 bp (1050 high quality bases) assembled on 2009-02-04
> UFO03664.5prime
CAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAAATATCGAA
AGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGATGCCCATTT
GGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCAGAACTCTG
CATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGCAGCAACAG
CAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGTGCGGGAAA
TAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATTGGCGGCGG
CAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCAACTCGGCA
GTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAACCGAATTC
CGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGACGAGAAGG
TGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAGTATCCCGA
TCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTGGAATCCTG
CGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTTCTGCACGT
CCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTGACAAGGGC
TATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGA
TTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCA
TCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGATCTACTGT
GACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCGCCGCTGCT
AAAGGTACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTCCCGGGCGC
CTCCGCCGAAGAAAAGAAGTGCAGTGGACATCCGGCAGCAGCAGCAAATC
TAGGAGGGACAGGGAATAGGGAGTCGGCGGATCGGCCAAGCGCGTAGCGA
CAACAGCAAGACACCAGCCATGGAGCACTTGCAGCAGCAGCAGATGCCAC
TTGCAGGCGGGGATTCCCACCATCATCTACATCAGCAGCCGCCGTCGCGT
GAATCCCTCGAAGATGAGTCAATGAATTCCTGCGGGCGATCTCTGAATCC
GGCAAT
UFO03664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 10470 | CG10897-RA | 7471..8622 | 8..1153 | 5355 | 98.2 | Plus |
| tou-RG | 10721 | CG10897-RG | 7326..7899 | 8..581 | 2870 | 100 | Plus |
| tou-RF | 11743 | CG10897-RF | 6953..7526 | 8..581 | 2870 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 8295..8873 | 581..1153 | 2490 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11583015..11583588 | 581..8 | 2870 | 100 | Minus |
| 2R | 25286936 | 2R | 11580970..11581399 | 1129..703 | 1700 | 95.1 | Minus |
| 2R | 25286936 | 2R | 11581626..11581750 | 705..581 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:00 has no hits.
UFO03664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:09 Download gff for
UFO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RC | 64..1185 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:07 Download gff for
UFO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7465..8586 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:43 Download gff for
UFO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7465..8586 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:43 Download gff for
UFO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11580979..11581398 | 704..1120 | 96 | <- | Minus |
| 2R | 11581628..11581749 | 582..703 | 100 | <- | Minus |
| 2R | 11583015..11583594 | 1..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:07 Download gff for
UFO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7468484..7468903 | 704..1120 | 96 | <- | Minus |
| arm_2R | 7469133..7469254 | 582..703 | 100 | <- | Minus |
| arm_2R | 7470520..7471099 | 1..581 | 99 | | Minus |
