UFO03665.5prime Sequence
1125 bp (1014 high quality bases) assembled on 2009-02-04
> UFO03665.5prime
CAGTCGACATGGCCTACGTCAATCATTTGATTGTCAGCAATTTTTCATAT
TTCTGGGACGAGATCGATGGGTTAATGTTCCCAAAGTGCCTCCCAGGAAG
CCTGGCATCTAGTGTGGCATACTACTTTGCAACGAGGCCCGTTCCGGAAC
GACCGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGGGTCCAGAA
CAAATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGCAAGTTCGT
GTCCTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTTCCGCGAGG
GCGCCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCGAGACCCTG
ACCTCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTGCGTGCCAA
GAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAAGCAGTTGA
TTGGGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACGAGCAGGGC
TGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACCCTGGGCCC
CGATGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGTGGTGATTG
TGGAGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGCCGCGCAGT
CTGAAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACCCTGGAGCG
AGCACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGTGGAGAAAC
TAGGTGCCAAAGGCAACCATCCGGAGGTGCCGCCGACGGCGGAGGATCTT
TGCACGGTGTGCTACACGTCCGGGACGACGGGCAATCCGAAGGGCGTGAT
GCTCACCCACGGCAACGTGGTGGCCGGCGTCTGTTCTGTGATCCTGCAGA
TGGGCGACCATCGCATCCGGGCGGGCGATGTGATGGTGTCATTCCTGCCC
CTGGCCACATGTTCGAGCGTTGCTGCGAGAATGGAATGTACTATGTGGGC
GGCTGTGTGGGCTTCTTTTCCGGCGACCTCAAGATACATGACTCAGAATG
CTGAACAAACGTAATGCGGCAGGCCTCGTCTTTGACCCGCTCTACACAGA
CTCGAATGTATTCACGCTCTGACTG
UFO03665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RC | 3309 | CG3961-RC | 379..1497 | 9..1095 | 4730 | 95.8 | Plus |
| CG3961-RA | 3373 | CG3961-RA | 443..1561 | 9..1095 | 4730 | 95.8 | Plus |
| CG3961-RD | 2649 | CG3961-RD | 321..1240 | 190..1095 | 4185 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18880311..18880981 | 1033..364 | 3260 | 99.4 | Minus |
| 3L | 28110227 | 3L | 18881078..18881253 | 365..190 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 18887060..18887157 | 192..95 | 475 | 99 | Minus |
| 3L | 28110227 | 3L | 18887552..18887598 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:50 has no hits.
UFO03665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:08 Download gff for
UFO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RC | 378..441 | 9..72 | 100 | == | Plus |
| CG3961-RC | 482..1425 | 95..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:51 Download gff for
UFO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 443..506 | 9..72 | 100 | == | Plus |
| CG3961-RA | 547..1490 | 95..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:15 Download gff for
UFO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 443..506 | 9..72 | 100 | == | Plus |
| CG3961-RA | 547..1490 | 95..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:15 Download gff for
UFO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18887198..18887215 | 55..72 | 100 | <- | Minus |
| 3L | 18887553..18887598 | 9..54 | 100 | | Minus |
| 3L | 18880307..18880979 | 366..1039 | 98 | <- | Minus |
| 3L | 18881078..18881251 | 192..365 | 100 | <- | Minus |
| 3L | 18887061..18887157 | 95..191 | 98 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:51 Download gff for
UFO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18880653..18880698 | 9..54 | 100 | | Minus |
| arm_3L | 18873407..18874079 | 366..1039 | 98 | <- | Minus |
| arm_3L | 18874178..18874351 | 192..365 | 100 | <- | Minus |
| arm_3L | 18880161..18880257 | 95..191 | 98 | == | Minus |
| arm_3L | 18880298..18880315 | 55..72 | 100 | <- | Minus |
