UFO03666.5prime Sequence
1115 bp (1018 high quality bases) assembled on 2009-02-04
> UFO03666.5prime
CAGTCGACATGGCGTTCCGGCTGCTTGGCACGGCCAAAACGATGGCCGGA
ATGATGCGGCGCAACTACACGGCGGGTTCCTTGCCGGGAAAGGGACAACG
CACACACATGGGTGCCACGGGCGCCGGGGTTTACATCCTGCCCACGGAGC
TGTCGCCCCTGCTGCGCTACGTGGTCAAACAGATCCAGCTGCTGTGCAAA
AAGCCGCCGAAGGGATTTGAAAAGTATTTCGAAGCCGGCGGCAAGTCGTC
TGGCCAACCGAAGGGATCCGTCGGCGATAAGAAGCCACCCGCGGGTTCCA
GCAAATCCGCCTCGGAGAAGCCCAGCACATCGACACCCGCCTCAGTTAAA
CCCAGCAGATCCCAAACAGACGCGAAATCGGACTGGAACTTCGGCATGTT
CAGCAACAGCTCGAGGGGGCCAGCAGGAAAAGGAGGCAACTCGCTGGGCG
GACGACCTCTGGGCGAGAACGGTGGCGGCGGGGACAGGGAGCGGTGGATC
CTTCTGGGTGCCATCGGAGCCGTCGTCCTGGTGGGTTCGTTCGCCTTCTT
CGAGATGGGCTACAAGGAGATCTCGTGGAAGGAGTTCGTCAACAGCTACC
TGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTGGTTAACAAGAAGTGGGTG
AGAGTGCGTCTGCAGCAGAACAGCAACAGCGGCAGCGGCGTCTTGTGGTT
CAACATCGGCAGTGTCGATAGCTTCGAGCGAAACCTGGAGGCAGCCCAGA
CGGAGCAGGGAACGGAATCCATCAACTTTGTGCCCGTAATCTACCGCAAC
GAGGTGGAGGCCGCCAGTCTGACGGGTCTGCTGCCCACGTTGCTCATCAT
ACGCTTTCTGGTCTATATGATGCGGAAGTCGGCCGATATGATGGGTGGAG
GCCGTGGGCGCAAGGTGGTGGTCTTTTTGGTGGCGTCATGCAGTCCACCG
CAAGCTACCAATCCCAATGAGATTGGTTGTGGGTTCAAGATGTTGCCGTT
GCGAGGAGGCCAAATCGAAATCATGGAGTCGTTACTTCCTGAAGAACCCG
CACCAGTATTGATTAGGCTCCAGAATACGAAGGTCCTGCTACCTGTACCC
GGAACGGGTTAAGCT
UFO03666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 260..1347 | 8..1083 | 5030 | 98.3 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..924 | 346..1083 | 3340 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17241217..17241721 | 595..91 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17240674..17241063 | 977..591 | 1785 | 99 | Minus |
| 3L | 28110227 | 3L | 17241784..17241869 | 93..8 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:33 has no hits.
UFO03666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:07 Download gff for
UFO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 248..1379 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:43 Download gff for
UFO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 253..1384 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:39 Download gff for
UFO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 253..1384 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:39 Download gff for
UFO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17240663..17241058 | 596..988 | 98 | <- | Minus |
| 3L | 17241217..17241719 | 93..595 | 100 | <- | Minus |
| 3L | 17241785..17241875 | 1..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:43 Download gff for
UFO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17233763..17234158 | 596..988 | 98 | <- | Minus |
| arm_3L | 17234317..17234819 | 93..595 | 100 | <- | Minus |
| arm_3L | 17234885..17234975 | 1..92 | 96 | | Minus |
