UFO03668.5prime Sequence
1115 bp (1011 high quality bases) assembled on 2009-02-04
> UFO03668.5prime
CAGTCGACATGTTCATCGAAGACGATGCGCAAATGGACAGCTTCTGGGTG
CAGAGCGCTATTGGCGCGATCAAGGCGATCGCCTTTGTCTACGACATCAT
CACCCTTCCGGTTTACTTGGTGCTGCAGAAGCCCTGGAAACGCCGTCAGG
ACTCGCGTCGCGTGAAGGCAAAGATCGTGCGGAATGATGACAATGAGCTG
ACCTACCGGACCACGGATCCACCACGGGATGTCCACGTGAAGATGCTGCA
AGAGAATATCGATACCCTGGAGAAGGTATTCAACTATGTGGCCAAAACTT
ACACGTCGAAGCGTTGTCTGGGCACCCGGCAGATCCTCAGCGAGGAGGAT
GAGGTGCAGCAGAACGGTCGAGTCTTCAAGAAGTACAACCTCGGTGACTA
CAAGTGGAAGACGTTCACCGAGGCGGAGCGCACGGCGGCTAATTTCGGGC
GCGGTCTGCGAGAACTTGGCCAGAAACCACGCGAGAACATTGTCATCTTT
GCCGAAACGCGAGCCGAATGGATGATAGCTGCCCACGGATGCTTCAAGCA
GGCTATGCCCATTGTCACTGTCTATGCTACGCTGGGCGATGATGGAGTTG
CTCATTGCATCACCGAAACGGAAGTCACCACGGTTATCACCTCCCATGAT
CTGCTGCCCAAGTTTAAGACGCTGCTCGACAAATGCCCATTGGTGAAGAC
TATTATCTATATTGAGGATCAGCTGCAAAAGACAGAAACCACTGGCTTCA
AGGAGGGCGTCAAGATCTTGCCGTTTAACCAAGTTGTCAAGACAGGACAG
GACAGTAAATTTGAGCACGTTCCACCCAAAGGGAGATGACATTGCCATTA
TCATGTACACTTCCGGATCCACTGGCACACCTAAGGGTGTCCTCCTCTCG
CACAAGAACTGCATTGCGACAATGAAGGATTTGTTGATATGGTGCCTATC
TATCCGGATGATGTACTGATCGGATTCTGCCCCTGGCTCCGTTTTTGAAT
TGGTTGCGGAAAGTGTTGTTTCTCATGACTGCGTTTCATGCTTACTTCGA
CCCCCTGGACTCTGATCGACCTAGCAGCAGATCAACGGGTGCAGGCCAAG
CCACGTCTGGAGCCA
UFO03668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acsl-RB | 3677 | CG8732-RB | 344..1425 | 9..1085 | 5070 | 98.4 | Plus |
| Acsl-RH | 3887 | CG8732-RH | 554..1635 | 9..1085 | 5070 | 98.4 | Plus |
| Acsl-RA | 3704 | CG8732-RA | 371..1452 | 9..1085 | 5070 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8678428..8678869 | 166..607 | 2195 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8678928..8679134 | 607..813 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 8680011..8680230 | 813..1031 | 845 | 97.3 | Plus |
| 2R | 25286936 | 2R | 8676472..8676608 | 32..168 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:38 has no hits.
UFO03668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:04 Download gff for
UFO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)44DEa-RE | 239..1336 | 1..1091 | 97 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:10 Download gff for
UFO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 364..1461 | 1..1091 | 97 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:48 Download gff for
UFO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 364..1461 | 1..1091 | 97 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:48 Download gff for
UFO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8676472..8676607 | 32..167 | 100 | -> | Plus |
| 2R | 8678430..8678868 | 168..606 | 99 | -> | Plus |
| 2R | 8678928..8679134 | 607..813 | 100 | -> | Plus |
| 2R | 8680012..8680294 | 814..1088 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:10 Download gff for
UFO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4563977..4564112 | 32..167 | 100 | -> | Plus |
| arm_2R | 4565935..4566373 | 168..606 | 99 | -> | Plus |
| arm_2R | 4566433..4566639 | 607..813 | 100 | -> | Plus |
| arm_2R | 4567517..4567799 | 814..1088 | 93 | -> | Plus |
