UFO03672.5prime Sequence
1106 bp (1017 high quality bases) assembled on 2009-02-04
> UFO03672.5prime
CAGTCGACATGGCCCCAGCGAAAAAACGCGAAAAAGACAGTAATCCGGAT
GGTTCTGCCGCAAATGGCATTATTGGCCTCACCCATGGAGCACCGGACGC
GAGCAATGCTGGCTCTACTGTACCGCCGACGGCCGAGGGTCAGGTCAAAC
TCAATGGCCACCAGCAGGAGCAGGAACTCTTTTTGCAGGCCTTTGAGAAG
CCCACGCAGATCTATCGCTACCTGCGCAATCGACACGAGACAAACCCCAT
CTTCCTCAACCGCACGCTCAGCTACATGAAGGAACGGATGTCGCGGAACA
ACAAGAAGCGGATCAGCTTCCAGGTAAACTCCATGCTGGAGAGCATAACA
CAAAAGTCGGAGGCGGTGAGCCAGAACTACCTGCACGTCATCTACGATTC
GCTGCACGAGAAGTTGCCGGCGAGGTTGGACAACGAGTCTGGCGAGGATT
TGCTGCAGGAGCAGCTGCTCTGCGAAGCGGGCGAGTCTGTGAGTGTGGAG
ACAACGCTGTACAAGATCACACGCAGCAAGCGAAAGGACAGCACGCTGGA
CTTTCAGGAGCTGCTCAGCAAGTGCTCGCAGATCGTGTACAACCCAAAGG
ATCGTGTGGGAGAACATGCCACCATCAGCATTCCTCTCCAGACGATGCGC
CCAATGGGTGAGCAGCACACACTGTACAAGCTGCTATTTCGCATCAAGGT
GCTGTCGCCAAGTACGTGCAATGATGAGAATGCAGAAACTCCACCGAACA
AGCGGTCGCGTCCAAATGAGAAAATGTTCGGATCGGAACTGATATTGTAC
GAGAAGTCCAGCGGATTCATAACCGAAGGCGAGTACGAGGCCATGCTGCA
GCCTCTTAATTCCACCAGCATCAAGTCCTTCTCACAAAGAAATGCACATG
GGAAACGATGCCGGATAGCTACATTCCACTCTCGTTGACTACGACGTCTA
CAGCAGAGTCCCATGCTCAAGTTCATCTGACGCTATCATGAGCAGCTGCC
CGAGAATGATTTCGCTCCGGGCTGCACGTATGTCAGCATCTGGAATGCGG
TGCGGGATGACTACACACATACTTAAATATACACACCTGCACGATAGAAT
GCTACG
UFO03672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RB | 3936 | CG8013-RB | 475..1527 | 9..1052 | 4960 | 98.8 | Plus |
| Su(z)12-RA | 4098 | CG8013-RA | 475..1527 | 9..1052 | 4960 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19921967..19922456 | 735..246 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 19921629..19921909 | 1005..731 | 1140 | 97.9 | Minus |
| 3L | 28110227 | 3L | 19922799..19922988 | 198..9 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 19922685..19922731 | 245..199 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:29 has no hits.
UFO03672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:50 Download gff for
UFO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RB | 220..1282 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:36 Download gff for
UFO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 475..1537 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:21 Download gff for
UFO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 475..1537 | 9..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:21 Download gff for
UFO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19921629..19921904 | 736..1005 | 97 | <- | Minus |
| 3L | 19921967..19922456 | 246..735 | 100 | <- | Minus |
| 3L | 19922685..19922731 | 199..245 | 100 | <- | Minus |
| 3L | 19922799..19922988 | 9..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:36 Download gff for
UFO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19914729..19915004 | 736..1005 | 97 | <- | Minus |
| arm_3L | 19915067..19915556 | 246..735 | 100 | <- | Minus |
| arm_3L | 19915785..19915831 | 199..245 | 100 | <- | Minus |
| arm_3L | 19915899..19916088 | 9..198 | 100 | | Minus |
