UFO03678.5prime Sequence
1123 bp (990 high quality bases) assembled on 2009-02-04
> UFO03678.5prime
CAGTCGACATGAGCGCCTCCGCGGAGCAGGAGACGGCTCCCATAGCTAAT
TCCCGTAGTGGTCGTACGGGCAGTGTTTTCCGCAGTTTCGGATCTTTATT
CGGCGGCAGCCAAAACAGTGGCGATCGCCCCCACACCCCGCAGGATGGCG
ACGGATATGTGGAGTTCGGAATGCAGGACCCGGATCGTAGTGGCCGTACG
CTCGGTACCTTTGCCGGAGTTTTTAGTCCAGTGGCTTTGTCCATGTTTAG
TGCTTTGGTCTTCATTCGAGTCGGGTACATCGTCGGAAATGCGGGCCTGT
ATGTAACCCTGCTGCAGTTCCTCATCGCCTACGGAATTCTGCTCTTCACG
GTGGCTTCGGTCTGCGCCATTTCCACCAATGGAGCCATCGAGGGAGGGGG
AGTTTATTTCATGATTAGTCGAACGCTGGGACTGGAGTTTGGTGGCTCGA
TCGGAACCCTCTTTTTCTTTGCCAATGTGGTGGGATCTGCAATGGCCATA
TCCGGCTGCACTGAGGGCATCATGGATAACTTCGGACCGCGTGGCCATTT
TGTGAGCGGGGACTCCCACCTACCGGATGGGGATTGGTGGCGTTTCCTTA
CCAGCAGCATGATAAACACCCTGCAACTGCTGGTTTGCCTGGTGGGCGCC
GCTCTGTTCGCCAAGACGTCAGTGATTATTTTGGCCACCGTCACCGTTTG
CCTGTTCGCCACTTACTTTAGTTTTCTATTTGTGGGCGCCACCAATAACA
CGATACCCGTTCCTGGGGACAATATTTTATCGAATACCACAACATTTCTC
GACTATACAGGGCTGAATGCCACAACGCTGCGGGATAATCTAGGATCCCA
CTACGGTCGCGATTACACGTCGAATGGGAAACAAGTCGATTTCTCCACCA
CCTTCGGTGTGGCTGTTTTCCGGAGTCACTGGATATGGCGGGAGCGAATA
TGTCCCGAAGACTGAAGACCCATCAAGAAGTATTCCTATGGACTCTTCTC
GGCAGTGGCGGTTAACTTCGTCTCCTAACATCATTCTGTCCTTCTCCTGA
ACTGGCGGACTCCGTACTTTACCATGCGAAACATTACCTGTTCCTGATGC
CGTCGAACTTTGGCTTCATTACG
UFO03678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10413-RB | 4010 | CG10413-RB | 325..1426 | 4..1101 | 5020 | 97.6 | Plus |
| CG10413-RA | 3783 | CG10413-RA | 98..1199 | 4..1101 | 5020 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18603707..18604050 | 752..409 | 1720 | 100 | Minus |
| 2L | 23513712 | 2L | 18604655..18604925 | 274..4 | 1340 | 99.6 | Minus |
| 2L | 23513712 | 2L | 18602524..18602877 | 1101..752 | 1085 | 91.6 | Minus |
| 2L | 23513712 | 2L | 18604433..18604568 | 408..273 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:15:06 has no hits.
UFO03678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:01 Download gff for
UFO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 95..1219 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:59 Download gff for
UFO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 96..1220 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:43 Download gff for
UFO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 96..1220 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:43 Download gff for
UFO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18602503..18602876 | 753..1120 | 91 | <- | Minus |
| 2L | 18603707..18604050 | 409..752 | 100 | <- | Minus |
| 2L | 18604433..18604567 | 274..408 | 100 | <- | Minus |
| 2L | 18604656..18604927 | 1..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:59 Download gff for
UFO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18602503..18602876 | 753..1120 | 91 | <- | Minus |
| arm_2L | 18603707..18604050 | 409..752 | 100 | <- | Minus |
| arm_2L | 18604433..18604567 | 274..408 | 100 | <- | Minus |
| arm_2L | 18604656..18604927 | 1..273 | 99 | | Minus |
