UFO03679.5prime Sequence
1116 bp (1044 high quality bases) assembled on 2009-02-04
> UFO03679.5prime
CAGTCGACATGGCCGATCGCTTCCAGATCTCAAAGGTGAACGGCACCGCG
AACGCCGGCTACGATGGCGAGGCTAGATCAGCTGAATCCGACCAGACGGA
CGCAGCCCACCCACTTCCGCCCACCAGCAACGAAAACCACCTGCATCCCA
AGGCTTCGGGGGAGACGGGCGAGAACCGCCGCAGCTCCCGGCTCTCCTTC
CGCGGATTCGGTAACTTCCTGCGCAAATCGGACGCCGAGCGCAAGTTTAG
TCTCGCCCAGCTAACAAAGGAGAGTCTGCCGCGCCTGGACAACTACCGCA
TTTCCATGCGCAACCTCAAGCGTCCTTCTATCGGCGAACTTCAAGGAGAG
GCGGTCGACCAGAGCATCACTATTCCCGAACCCGAACCGGAGGCAACTGG
CGGACACATCAAGCTAGGATGGATCGTGGGCGTGCTGATACCTTGCCTTC
TCAACATCTGGGGCGTAATGCTCTTCCTGCGCCTCAGCTGGGTGGTGGCC
GAGTCGGGCATCCTGCAGTCCCTGATTATAATTACGATCTCCGCGGTGGT
CTGCGTCATCACGACGCTCTCGCTGTCGGCCATTAGCACCAACGGCGAGG
TCAAGGGCGGCGGCGTCTACTTCATCATATCCCGTTCGCTGGGCCCCGAG
TTTGGGGCGTCGGTGGGCGTGGTCTTCGCCTTCGCCAACGCCGTCTCAGC
CTCGATGAACACCATCGGCTTCTGCGAATCGCTAAATGTTTTACTCAAGA
ACAACGACCTGAAGATTGTCGACAACGGGATCAATGACATCCGGATCGTG
GGATCGATAACCGTGCTGGTGCTCATCCTAATCTGCTGCGTGGGTATGGA
GTGGGAGACGAAGGCGCAGAACTTCCTGATCGTCACGATTGTCCTGGCCA
TCTTCAATTTCCTGATCGGAGCTGCCATTGGACCCAGGGTATGAGGAGCA
ATCTCTAGGGGTTTCGTCGGCTTTTCATGGGCTACTTTGAGGAAACTTCG
GATCGGACTATCGCTTTGCGGAGGGCGTAACCACGACTTTTCAGCGTGTT
CGCTATCTTCTTTCAGCGGACGGCATCAGTGGCAATTGCGGGAACTCAGA
TGCGGAACTGCTATAC
UFO03679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31547-RB | 3891 | CG31547-RB | 406..1469 | 8..1064 | 5130 | 99.2 | Plus |
| CG31547-RA | 3297 | CG31547-RA | 72..875 | 268..1064 | 3830 | 99 | Plus |
| Ncc69-RG | 4762 | CG4357-RG | 1843..1897 | 444..498 | 185 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5493105..5493492 | 747..360 | 1940 | 100 | Minus |
| 3R | 32079331 | 3R | 5502036..5502297 | 269..8 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 5492653..5492887 | 979..748 | 1025 | 98.7 | Minus |
| 3R | 32079331 | 3R | 5498777..5498870 | 362..269 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 5492506..5492578 | 1064..994 | 250 | 95.9 | Minus |
| 3L | 28110227 | 3L | 12374399..12374453 | 498..444 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:03 has no hits.
UFO03679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:00 Download gff for
UFO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31547-RB | 401..1486 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:43 Download gff for
UFO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31547-RB | 401..1486 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:30 Download gff for
UFO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31547-RB | 401..1486 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:30 Download gff for
UFO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5492654..5492887 | 748..978 | 98 | <- | Minus |
| 3R | 5493105..5493489 | 363..747 | 100 | <- | Minus |
| 3R | 5498777..5498870 | 269..362 | 100 | <- | Minus |
| 3R | 5502037..5502300 | 1..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:43 Download gff for
UFO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1318376..1318609 | 748..978 | 98 | <- | Minus |
| arm_3R | 1327759..1328022 | 1..268 | 98 | | Minus |
| arm_3R | 1318827..1319211 | 363..747 | 100 | <- | Minus |
| arm_3R | 1324499..1324592 | 269..362 | 100 | <- | Minus |
