UFO03680.5prime Sequence
1133 bp (1022 high quality bases) assembled on 2009-02-04
> UFO03680.5prime
CAGTCGACATGCTACCCAAACTAAAAATATCCGCATTCCTGTTGAAGCGC
CTGGAGCGAACAAAGCAGCAGTGCAGTGGATGCTTGTTTGGAGTTTTCTA
TGGAGAAGGTACCTTACTCCTACTGAGCTTCAACATTGAGTCCAGTTTGG
GACAACTGAACTACGAGCAGATCCAACACAGATTCCCGGCGGAACTGGAT
TTATGCGGACTGGTCAAGTTTGGTGGTTGCACCGATGGAGAGGCGCACCT
TAATGAGGTCATCAAATCTGTGGATATCACCGATAATCCCATCCTACTGC
AATGCGAATTGGGCACCTTGGTGGGCTTGCGGGCCTCGTTTTTCGTCCAT
GGAAAACTGGAGGAGGTACCCTACGAGGTTATGGAGGCACATCAGCTGTA
CAACGACTTCTGCTTCACCCGGCTGCAGTGCGGATTCTTTCTGCAAACGG
CCGCCACACCGGAATCCGTGGCCCGGGAAATGCATGTGCTGCGCAAAAGG
GTAGCCGACGGAAATCTAGTGTTTAACGTTCCGCAGACAAAGATTTTCAT
TAATAACTACGGGCCACTGGACAAACAGTTTAGCGGCGATTCCCAAATTC
AGGATCTTATAGACGTCATTCCAACTCCAGGACATGAAAAGGAGACTGCC
AGTGTCGACAAAAAGAAGCTTAAAGGTCAGAACACGCCAGTCAAGAGACT
GGCTCCGACTGGCTGCGACTACGAGGTGATCCCCATCGATGTGATGCGCT
CGCGCAGTCGTGATCCCGTGTCCGGAGAGCCACCTCATCCGGCACTCAGC
ATTGCTGTGACCAATGAGGACAGATCCGAGTCCAGGTACCATTAGAGATC
GAAGCCATGGCCATTCTCTGCCGCAAACGAAGCTCCAACGGCTATACGAC
GTACTCATCGAGAGCATCTGCAGAGGTCTCAGATTGTTCGAACTGAGCCT
GATTGAGCATCTCACGGAGTCGGGAAGTGAAAGCTGCTGGTGCCGCTAGC
TATCACTTCTACCCACAGAGTTTGGTCACTTCCTGAGCTGGCCCTATCTG
GAAGGTCGCGTGACGAATACACCAGCATGCTAATGAAACGCAAGCGCCCT
GCATCGCACAGTTGCTTGCCATCATGTCCCTTA
UFO03680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 95..1203 | 9..1113 | 5235 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15576760..15577818 | 46..1098 | 4830 | 98.4 | Plus |
| 3L | 28110227 | 3L | 15576664..15576702 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:30 has no hits.
UFO03680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:58 Download gff for
UFO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 92..1221 | 1..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:22 Download gff for
UFO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 88..1217 | 1..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:28 Download gff for
UFO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 88..1217 | 1..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:28 Download gff for
UFO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15576657..15576702 | 1..47 | 91 | -> | Plus |
| 3L | 15576762..15577845 | 48..1124 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:22 Download gff for
UFO03680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15569757..15569802 | 1..47 | 91 | -> | Plus |
| arm_3L | 15569862..15570945 | 48..1124 | 98 | | Plus |
