UFO03681.5prime Sequence
1099 bp (995 high quality bases) assembled on 2009-02-04
> UFO03681.5prime
CAGTCGACATGGCAGCAGCCACATGGAGCTGGCTGTTGGCCCCATTCCTG
CTCCTCCACTGGGCCAGTGCAGGAGCGGGCGGAGGAGCAGGCGGCTCGGG
AGCGGGACTGAGCGGCCCCGCCGTCTTTACCAGCTCCTTCCTGGTGCGCT
TCCGGCGCGGAGTGGACAACTCGTTTGCCCATGATGTGGCCGACAAGTAC
GGCTTCGACAACCTAGGCCCGCTGGTCGGCGCCGATGGACACGAGTATCA
TTTCAAGCACCGGACCCTTCCACATGCCCGCTCCAGGAGGAGTCTGACGC
ACACACGGGCCCTCAAGAGCCATCCGGCGGTGCATACGGCCGTGCAACAG
CCGGGATTCAAGCGGGTTAAACGTGGCCTGCGGCCGGCGGTGCCCGCCAT
TCACGGCATGAAGTTCGACCTGAAAGTTGGCGAGGGCAATCGGATTGACG
AGGAGCCCACTGACCCCTACTTTCCCATGCAATGGTACCTCAAGAACACG
GGTCAGAATGGCGGCAAAGTCAGGCTGGATCTGAATGTGCAGGCTGCCTG
GGCCCAGGGAATCACCGGGAAGAATGTTACGACGGCCATCATGGATGATG
GCGTGGACTACATGCATCCGGATCTGAAATTCAATTATAACGCCGAGGCC
AGTTATGACTTCAGCAGTAACGATCCCTTTCCGTATCCCCGATACACCGA
CGACTGGTTCAACAGCCATGGAACTCGTTGTGCCGGCGAAGTGGCTGCTG
CCAGAGATAATGGAATTTGCGGCGTTGGCGTTGCTTATGACAGCAAAATC
GCACGCATTCGCATGCTGGATCAGCCGTACATGACGGACCTAATCGAGGC
CAACTCCATGGGCCACGAGCCGCACAAAATCCACATATACAGCGTCCTCC
TGGGGTCCCACCGATGATGGCAAGACCGTGGACGGTCCCCGGATGCCACC
ATGCGAGCGATAGTCCAGGGCGTCATGAGGTCGAAATGGCCTGGGCACAT
CTATGTTTGGCATCCGGCGACGGCGGCGAAGGAAGATGATGCAATGGTGA
CGCCTACGCCGCCCTCATGTGTGACATTTCCATACAGGGCCATTACCGA
UFO03681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amon-RA | 3991 | CG6438-RA | 436..1533 | 8..1099 | 5095 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26702601..26702873 | 601..329 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 26713511..26713724 | 221..8 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 26700817..26700987 | 975..805 | 760 | 98.8 | Minus |
| 3R | 32079331 | 3R | 26703712..26703823 | 332..221 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26701517..26701607 | 803..713 | 455 | 100 | Minus |
| 3R | 32079331 | 3R | 26701948..26702024 | 715..639 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 26700634..26700740 | 1083..979 | 220 | 88.9 | Minus |
| 3R | 32079331 | 3R | 26702474..26702512 | 638..600 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:41 has no hits.
UFO03681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:55 Download gff for
UFO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amon-RA | 431..1515 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:45 Download gff for
UFO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amon-RA | 431..1515 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:08 Download gff for
UFO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amon-RA | 431..1515 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:08 Download gff for
UFO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26701516..26701604 | 716..804 | 98 | <- | Minus |
| 3R | 26701948..26702024 | 639..715 | 100 | <- | Minus |
| 3R | 26702474..26702511 | 601..638 | 100 | <- | Minus |
| 3R | 26702602..26702872 | 330..600 | 100 | <- | Minus |
| 3R | 26703715..26703822 | 222..329 | 100 | <- | Minus |
| 3R | 26713511..26713728 | 1..221 | 98 | | Minus |
| 3R | 26700812..26700987 | 805..978 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:45 Download gff for
UFO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22527670..22527746 | 639..715 | 100 | <- | Minus |
| arm_3R | 22528196..22528233 | 601..638 | 100 | <- | Minus |
| arm_3R | 22526534..22526709 | 805..978 | 97 | <- | Minus |
| arm_3R | 22527238..22527326 | 716..804 | 98 | <- | Minus |
| arm_3R | 22528324..22528594 | 330..600 | 100 | <- | Minus |
| arm_3R | 22529437..22529544 | 222..329 | 100 | <- | Minus |
| arm_3R | 22539233..22539450 | 1..221 | 98 | | Minus |
