UFO03686.5prime Sequence
1122 bp (1020 high quality bases) assembled on 2009-02-04
> UFO03686.5prime
CAGTCGACATGATGCGACCTCGCTGTCTGGTGTCCTTTTTGGGCATCTGC
CTGGTAATCAGCCTGGGAATGCGTTGCGATGCTCGAGCGGTGAACGTGAG
CAACACCTGGACGATGCCGCAAGAGGGTCTGAACGTCTTTTATCGCTTCT
TCCGCGATCGCATATCCTGGTTTGAGGCCGATGCCGTCTGTCAATTTCAT
CACGCCAATCTAGTGACGGTCGACAACAGTTTTCAATTCGATGCAACGCG
CGACCTGCTGAGGGAATTGGATGTGAACGACATCGTTTGGATTGGTCTCA
TGCGACCGCAGAACTCGGATCGTTTTATGTGGTCGAACTCGCGTCCCTTG
GTGGCAGATACTGGTTACTGGGCCGAATCCCTACCACTGATGGATGCTCC
GCTCTGCGCCGTAATCGATCCCATTCGAGATTACCGCTGGCACGCTCTGC
GCTGCGGTGGACCCGAAACGGCCTCCTTCCTTTGCGAAATGCCAGTTCCC
AGCTGGGCGGATGCTTGCATACTGAAGGACATGCCCAATTTGACCATGCA
ATACATGGCGGATACGGCCAGCATCGAGCTGATCCGCAATTGCCAGGAGG
AGGGACTGCTGCGACACACCTGCAAGGGCAAGGAGGATCGTGAGCGTGCC
ATTCGACAGCTGATCTGTCCCAAGGAGCGTTTGGAGGCGCAGCGCATCAA
CGACATCACAAACTCGCACTTCAAGTCGCTGCAGATCATCAACAACATCC
ACACTGATAACAAGGAGAATAACGACATCGATCTGCTGCCCAACTATGGC
CGCCGATCCGGAATGGCCATCAACATCGAGGTGGCGCCACCAGTGCCGCC
CGTTTCGGTTCCCGGATTGGGAGAGCTGATGCAGCGGATGCTCCGGGCGC
CGTATCACTGTCCGGACTGTATCGCATACCTGACCTGGTGCCCAGGCCTG
TGAGGAGCCGCCAAGAAGGTGATCAACACCGGGACTTTGTCCAGGAGCTG
CAAGGTTAGCCATTCAGCAGCAGCACAACCAGCAGCAGCAGCCACAGCAG
CCAACAGAAGTTCGCGCCAAGTCGTTGTGCACACCACGAGGAGACCGATG
ATGGGCGACTGCCGACTGAATG
UFO03686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-RB | 4315 | CG15765-RB | 71..1171 | 9..1109 | 5060 | 97.8 | Plus |
| CG15765-RA | 3138 | CG15765-RA | 144..1244 | 9..1109 | 5060 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5837204..5837620 | 634..1051 | 1670 | 96.4 | Plus |
| X | 23542271 | X | 5836730..5836890 | 335..495 | 805 | 100 | Plus |
| X | 23542271 | X | 5836973..5837115 | 494..636 | 715 | 100 | Plus |
| X | 23542271 | X | 5834350..5834480 | 89..219 | 655 | 100 | Plus |
| X | 23542271 | X | 5836040..5836156 | 219..335 | 585 | 100 | Plus |
| X | 23542271 | X | 5819122..5819204 | 9..91 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:29 has no hits.
UFO03686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:41 Download gff for
UFO03686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 139..1255 | 9..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:37 Download gff for
UFO03686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..1260 | 9..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:02 Download gff for
UFO03686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..1260 | 9..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:02 Download gff for
UFO03686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5836041..5836155 | 220..334 | 100 | -> | Plus |
| X | 5836730..5836890 | 335..495 | 100 | -> | Plus |
| X | 5836975..5837114 | 496..635 | 100 | -> | Plus |
| X | 5819122..5819202 | 9..89 | 100 | -> | Plus |
| X | 5834351..5834480 | 90..219 | 100 | -> | Plus |
| X | 5837206..5837695 | 636..1122 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:37 Download gff for
UFO03686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5713155..5713235 | 9..89 | 100 | -> | Plus |
| arm_X | 5728384..5728513 | 90..219 | 100 | -> | Plus |
| arm_X | 5730074..5730188 | 220..334 | 100 | -> | Plus |
| arm_X | 5730763..5730923 | 335..495 | 100 | -> | Plus |
| arm_X | 5731008..5731147 | 496..635 | 100 | -> | Plus |
| arm_X | 5731239..5731728 | 636..1122 | 94 | | Plus |
