UFO03688.5prime Sequence
1134 bp (1028 high quality bases) assembled on 2009-02-04
> UFO03688.5prime
CAGTCGACATGCGCACGAAACACCTGATCCTGATACTGATCGGAGTGATA
ATCGCCACGATCGTCTTCATCGCATTTGGTCCAGCCGGAGAGCCGAACGA
TTCATTCAAGAACATCGTTGTCCAGACGCACCAGCAGTTTAAAGAGTTCC
AGGAAAACCTCCGCGTTGGCTTGGAACGCAAAAAGCTCGAAATAGACCCA
AAGTATTTGCTTCTTCTGGGCTTCACCTCGTCAAATGAAGCTACAGGCCA
ACAGCAGCAGCTGGATCAGCAAAATGTGGTGGACATCGGTTCACCAGGTC
AGCAACTGCCAAAGACAGATTTTTCAGCGCCGGCTACAAAAGCGGAACTG
GAGCTCAGCGAACTGCGAGGTCTGCGGCGTCCACAGGATGCTGTTACCTT
CGGTAGTCAGGCAGGAGATCAAAAGGGGCAGCGGAAGCGGATCACGACGC
CGTACAACGGTACAAAGAGCAACTTCACAATCGTCAGCTATGTGCTGGAG
GGGCAGGCCGCATCGGCCATCCTGCTGGCCCAGAATATTGCCGCCAAGCT
TCCCAGCGAGTACCTGCTAATCTACGATTTGGGCGTTTCCGAGGAGCAAC
TACGGGATTTGGGCGCCTACTGTAATAACAGCCGATGCTCGGTGATCACC
TATGATCTGTCGGAGTTTCCCTCCTTCGTCGCCGATCAGCGGACGCACGC
CTACCGGCCCATTGTAATTAAGGACGGTCTTATGCGTGCCCGATCGGTTC
TCTTCTTGGAAAACAGCATGCGCGTGCGCGGAGGTTCCGCCCAGCTGCGA
AGTCTGCAGAGCATCGTTATGAATCCAGGAGTGGGAAAATCTGCAGTCAA
GTCCGCTGGAGTGCTCGGATGGAACACAGCGACGGCGGTATCCTCTCTGA
CGCATCCAAAATGTTCGACTACTTTGAGTCGAAAGCTGAGGAGTTTACTT
TCTTCGGATGGTCGACCTGGATGCTGTCTTCTTCTCGGAAGGCTCCTTGG
TGGCCGAGAAGATCATGCCTCCCTGCTGAATGCTGCCTCACCCCTCGAGT
GCATCGATCGATCGGTGCCAATCGAATGGCTGCAAGTTCCACCAGAAGGC
GGAGTTTCGAATACTCGGGGCTGCAAGGCACGAT
UFO03688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14764-RC | 2272 | CG14764-RC | 366..1478 | 8..1116 | 5240 | 98.5 | Plus |
| CG14764-RA | 2742 | CG14764-RA | 836..1948 | 8..1116 | 5240 | 98.5 | Plus |
| CG14764-RB | 1293 | CG14764-RB | 836..980 | 8..152 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7947611..7948523 | 1059..150 | 4275 | 99.1 | Minus |
| 2R | 25286936 | 2R | 7953901..7954046 | 153..8 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:16 has no hits.
UFO03688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:39 Download gff for
UFO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14764-RA | 819..1929 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:28 Download gff for
UFO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14764-RA | 829..1939 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:55 Download gff for
UFO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14764-RA | 829..1939 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:55 Download gff for
UFO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7947605..7948520 | 153..1064 | 99 | <- | Minus |
| 2R | 7953902..7954050 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:28 Download gff for
UFO03688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3835110..3836025 | 153..1064 | 99 | <- | Minus |
| arm_2R | 3841407..3841555 | 1..152 | 97 | | Minus |
